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Cluster: HRGMv2_1434_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1434_10 HRGMv2_1434_10_8 6855 7337 + 4.A.6.1.5
sulfatase HRGMv2_1434_10 HRGMv2_1434_10_9 7664 8716 - S1_4
TF HRGMv2_1434_10 HRGMv2_1434_10_10 8923 9687 + HTH_DeoR
CAZyme HRGMv2_1434_10 HRGMv2_1434_10_11 9884 11305 - GH1
TC HRGMv2_1434_10 HRGMv2_1434_10_12 11381 13159 - 4.A.3.1.1
TF HRGMv2_1434_10 HRGMv2_1434_10_13 13435 14445 + LacI
TC HRGMv2_1434_10 HRGMv2_1434_10_14 14780 16540 - 4.A.3.1.1
CAZyme HRGMv2_1434_10 HRGMv2_1434_10_15 16717 18159 - GH1
TF HRGMv2_1434_10 HRGMv2_1434_10_16 18501 19538 + LacI
CAZyme HRGMv2_1434_10 HRGMv2_1434_10_17 19800 21239 - GH1
TC HRGMv2_1434_10 HRGMv2_1434_10_18 21306 23081 - 4.A.3.1.1
TF HRGMv2_1434_10 HRGMv2_1434_10_19 23437 24441 + LacI
TC HRGMv2_1434_10 HRGMv2_1434_10_20 24656 24994 + 4.A.3.1.2
Gene ID: HRGMv2_1434_10_8
Type: TC
Location: 6855 - 7337 (+)
Gene ID: HRGMv2_1434_10_9
Type: sulfatase
Location: 7664 - 8716 (-)
Gene ID: HRGMv2_1434_10_10
Type: TF
Location: 8923 - 9687 (+)
Gene ID: HRGMv2_1434_10_11
Type: CAZyme
Location: 9884 - 11305 (-)
Gene ID: HRGMv2_1434_10_12
Type: TC
Location: 11381 - 13159 (-)
Gene ID: HRGMv2_1434_10_13
Type: TF
Location: 13435 - 14445 (+)
Gene ID: HRGMv2_1434_10_14
Type: TC
Location: 14780 - 16540 (-)
Gene ID: HRGMv2_1434_10_15
Type: CAZyme
Location: 16717 - 18159 (-)
Gene ID: HRGMv2_1434_10_16
Type: TF
Location: 18501 - 19538 (+)
Gene ID: HRGMv2_1434_10_17
Type: CAZyme
Location: 19800 - 21239 (-)
Gene ID: HRGMv2_1434_10_18
Type: TC
Location: 21306 - 23081 (-)
Gene ID: HRGMv2_1434_10_19
Type: TF
Location: 23437 - 24441 (+)
Gene ID: HRGMv2_1434_10_20
Type: TC
Location: 24656 - 24994 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1434_10_16 vegetarian > omnivore 1.03469 0.02242

🧭 Explore Read Mapping of CGC

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