dbCAN HGM

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Cluster: HRGMv2_1433_CGC7

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
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🧬 Cluster Details

Gene Count: 12
CAZyme Count: 7
Substrate:
Genome ID: HRGMv2_1433
CGC Family ID: CGCFAM_00398
Continent: Asia
Source Study: Ma et al., 2024 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_12	12782	13801	-	GT2
pfam	HRGMv2_1433_14	HRGMv2_1433_14_13	13972	15102	-	Acyl_transf_3
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_14	15215	16318	+	GT2
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_15	16325	17365	+	GT2
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_16	17440	18558	+	GT2
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_17	18571	19638	+	GT2
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_18	19639	22125	+	GT2 \| GT2
pfam	HRGMv2_1433_14	HRGMv2_1433_14_19	22439	23695	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
pfam	HRGMv2_1433_14	HRGMv2_1433_14_20	23776	25986	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
CAZyme	HRGMv2_1433_14	HRGMv2_1433_14_21	26252	27985	+	GH25
pfam	HRGMv2_1433_14	HRGMv2_1433_14_22	28086	30227	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Peptidase_C39_2 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
TC	HRGMv2_1433_14	HRGMv2_1433_14_23	30289	31230	-	2.A.7.18.1

Gene ID: HRGMv2_1433_14_12
Type: CAZyme
Location: 12782 - 13801 (-)

Gene ID: HRGMv2_1433_14_13
Type: pfam
Location: 13972 - 15102 (-)

Gene ID: HRGMv2_1433_14_14
Type: CAZyme
Location: 15215 - 16318 (+)

Gene ID: HRGMv2_1433_14_15
Type: CAZyme
Location: 16325 - 17365 (+)

Gene ID: HRGMv2_1433_14_16
Type: CAZyme
Location: 17440 - 18558 (+)

Gene ID: HRGMv2_1433_14_17
Type: CAZyme
Location: 18571 - 19638 (+)

Gene ID: HRGMv2_1433_14_18
Type: CAZyme
Location: 19639 - 22125 (+)

Gene ID: HRGMv2_1433_14_19
Type: pfam
Location: 22439 - 23695 (+)

Gene ID: HRGMv2_1433_14_20
Type: pfam
Location: 23776 - 25986 (+)

Gene ID: HRGMv2_1433_14_21
Type: CAZyme
Location: 26252 - 27985 (+)

Gene ID: HRGMv2_1433_14_22
Type: pfam
Location: 28086 - 30227 (+)

Gene ID: HRGMv2_1433_14_23
Type: TC
Location: 30289 - 31230 (-)

Taxonomic Lineage

Domain

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Phylum

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Class

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Order

Coriobacteriales

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Family

Coriobacteriaceae

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Genus

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Species

Collinsella sp900554465

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_1433_14_13	vegan > omnivore	1.80832	0.00229
HRGMv2_1433_14_13	vegetarian > omnivore	1.60683	0.03201

🧭 Explore Read Mapping of CGC

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