Cluster: HRGMv2_1433_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1433
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1433_10 | HRGMv2_1433_10_6 | 5493 | 7709 | + | 9.B.97.5.1 |
| TC | HRGMv2_1433_10 | HRGMv2_1433_10_7 | 8255 | 9517 | - | 2.A.55.3.6 |
| STP | HRGMv2_1433_10 | HRGMv2_1433_10_8 | 9526 | 11370 | - | CBS | CBS |
| NULL(UNKNOWN) | HRGMv2_1433_10 | HRGMv2_1433_10_9 | 11406 | 11666 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1433_10 | HRGMv2_1433_10_10 | 11701 | 13107 | - | CE4 |
Gene ID: HRGMv2_1433_10_6
Type: TC
Location: 5493 - 7709 (+)
Type: TC
Location: 5493 - 7709 (+)
Gene ID: HRGMv2_1433_10_7
Type: TC
Location: 8255 - 9517 (-)
Type: TC
Location: 8255 - 9517 (-)
Gene ID: HRGMv2_1433_10_8
Type: STP
Location: 9526 - 11370 (-)
Type: STP
Location: 9526 - 11370 (-)
Gene ID: HRGMv2_1433_10_9
Type:
Location: 11406 - 11666 (+)
Type:
Location: 11406 - 11666 (+)
Gene ID: HRGMv2_1433_10_10
Type: CAZyme
Location: 11701 - 13107 (-)
Type: CAZyme
Location: 11701 - 13107 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900554465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.