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Cluster: HRGMv2_1433_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1433_34 HRGMv2_1433_34_11 9991 10434 + 4.A.6.1.16
pfam HRGMv2_1433_34 HRGMv2_1433_34_12 10434 10715 + YajC
TC HRGMv2_1433_34 HRGMv2_1433_34_13 10752 11234 + 4.A.6.1.4
TC HRGMv2_1433_34 HRGMv2_1433_34_14 11325 12125 + 4.A.6.1.4
TC HRGMv2_1433_34 HRGMv2_1433_34_15 12115 13197 + 4.A.6.1.4
TF HRGMv2_1433_34 HRGMv2_1433_34_16 13382 14113 + GntR
STP HRGMv2_1433_34 HRGMv2_1433_34_17 14228 15394 + SIS | SIS
CAZyme HRGMv2_1433_34 HRGMv2_1433_34_18 15512 16681 + CE9
Gene ID: HRGMv2_1433_34_11
Type: TC
Location: 9991 - 10434 (+)
Gene ID: HRGMv2_1433_34_12
Type: pfam
Location: 10434 - 10715 (+)
Gene ID: HRGMv2_1433_34_13
Type: TC
Location: 10752 - 11234 (+)
Gene ID: HRGMv2_1433_34_14
Type: TC
Location: 11325 - 12125 (+)
Gene ID: HRGMv2_1433_34_15
Type: TC
Location: 12115 - 13197 (+)
Gene ID: HRGMv2_1433_34_16
Type: TF
Location: 13382 - 14113 (+)
Gene ID: HRGMv2_1433_34_17
Type: STP
Location: 14228 - 15394 (+)
Gene ID: HRGMv2_1433_34_18
Type: CAZyme
Location: 15512 - 16681 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1433_34_12 vegan > omnivore 1.13957 0.00229

🧭 Explore Read Mapping of CGC

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