Cluster: HRGMv2_1396_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1396
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1396_1 | HRGMv2_1396_1_291 | 337093 | 337935 | - | 3.A.1.103.5 |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_292 | 338058 | 339020 | + | GT81 |
| pfam | HRGMv2_1396_1 | HRGMv2_1396_1_293 | 338895 | 339572 | - | IU_nuc_hydro |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_294 | 339629 | 340864 | - | GT4 |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_295 | 340886 | 341944 | - | GT2 |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_296 | 341953 | 343068 | - | GT2 |
| TC | HRGMv2_1396_1 | HRGMv2_1396_1_297 | 343070 | 343825 | - | 3.A.1.103.1 |
| TC | HRGMv2_1396_1 | HRGMv2_1396_1_298 | 343835 | 344647 | - | 3.A.1.103.4 |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_299 | 345008 | 346144 | - | GT2 |
| CAZyme | HRGMv2_1396_1 | HRGMv2_1396_1_300 | 346377 | 348380 | + | GT2 |
Gene ID: HRGMv2_1396_1_291
Type: TC
Location: 337093 - 337935 (-)
Type: TC
Location: 337093 - 337935 (-)
Gene ID: HRGMv2_1396_1_292
Type: CAZyme
Location: 338058 - 339020 (+)
Type: CAZyme
Location: 338058 - 339020 (+)
Gene ID: HRGMv2_1396_1_293
Type: pfam
Location: 338895 - 339572 (-)
Type: pfam
Location: 338895 - 339572 (-)
Gene ID: HRGMv2_1396_1_294
Type: CAZyme
Location: 339629 - 340864 (-)
Type: CAZyme
Location: 339629 - 340864 (-)
Gene ID: HRGMv2_1396_1_295
Type: CAZyme
Location: 340886 - 341944 (-)
Type: CAZyme
Location: 340886 - 341944 (-)
Gene ID: HRGMv2_1396_1_296
Type: CAZyme
Location: 341953 - 343068 (-)
Type: CAZyme
Location: 341953 - 343068 (-)
Gene ID: HRGMv2_1396_1_297
Type: TC
Location: 343070 - 343825 (-)
Type: TC
Location: 343070 - 343825 (-)
Gene ID: HRGMv2_1396_1_298
Type: TC
Location: 343835 - 344647 (-)
Type: TC
Location: 343835 - 344647 (-)
Gene ID: HRGMv2_1396_1_299
Type: CAZyme
Location: 345008 - 346144 (-)
Type: CAZyme
Location: 345008 - 346144 (-)
Gene ID: HRGMv2_1396_1_300
Type: CAZyme
Location: 346377 - 348380 (+)
Type: CAZyme
Location: 346377 - 348380 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905200715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1396_1_294 | vegetarian > omnivore | 1.93126 | 0.03181 |
| HRGMv2_1396_1_294 | vegetarian > vegan | 3.63938 | 0.03024 |
| HRGMv2_1396_1_295 | vegetarian > omnivore | 2.11256 | 0.03181 |
| HRGMv2_1396_1_295 | vegetarian > vegan | 3.78393 | 0.03024 |
| HRGMv2_1396_1_296 | vegetarian > omnivore | 2.23355 | 0.03181 |
| HRGMv2_1396_1_296 | vegetarian > vegan | 2.75959 | 0.03024 |
| HRGMv2_1396_1_298 | vegetarian > vegan | 2.81832 | 0.03024 |
| HRGMv2_1396_1_299 | vegetarian > vegan | 2.52728 | 0.03024 |