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Cluster: HRGMv2_1396_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1396_17 HRGMv2_1396_17_19 21587 22513 - CE7
TC HRGMv2_1396_17 HRGMv2_1396_17_20 22645 23472 - 3.A.1.5.27
TC HRGMv2_1396_17 HRGMv2_1396_17_21 23473 25488 - 3.A.1.5.25
TC HRGMv2_1396_17 HRGMv2_1396_17_22 25492 26448 - 3.A.1.5.38
TC HRGMv2_1396_17 HRGMv2_1396_17_23 26604 28217 - 3.A.1.5.27
pfam HRGMv2_1396_17 HRGMv2_1396_17_24 28583 30523 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1396_17 HRGMv2_1396_17_25 30530 32833 - 2.A.66.4.4
pfam HRGMv2_1396_17 HRGMv2_1396_17_26 32837 33337 - tRNA_edit
pfam HRGMv2_1396_17 HRGMv2_1396_17_27 33471 36350 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_1396_17 HRGMv2_1396_17_28 36610 37440 + 3.A.1.132.3
Gene ID: HRGMv2_1396_17_19
Type: CAZyme
Location: 21587 - 22513 (-)
Gene ID: HRGMv2_1396_17_20
Type: TC
Location: 22645 - 23472 (-)
Gene ID: HRGMv2_1396_17_21
Type: TC
Location: 23473 - 25488 (-)
Gene ID: HRGMv2_1396_17_22
Type: TC
Location: 25492 - 26448 (-)
Gene ID: HRGMv2_1396_17_23
Type: TC
Location: 26604 - 28217 (-)
Gene ID: HRGMv2_1396_17_24
Type: pfam
Location: 28583 - 30523 (-)
Gene ID: HRGMv2_1396_17_25
Type: TC
Location: 30530 - 32833 (-)
Gene ID: HRGMv2_1396_17_26
Type: pfam
Location: 32837 - 33337 (-)
Gene ID: HRGMv2_1396_17_27
Type: pfam
Location: 33471 - 36350 (-)
Gene ID: HRGMv2_1396_17_28
Type: TC
Location: 36610 - 37440 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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