dbCAN Logo

Cluster: HRGMv2_1396_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1396_5 HRGMv2_1396_5_11 20137 22587 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1396_5 HRGMv2_1396_5_12 22609 22728 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1396_5 HRGMv2_1396_5_13 22812 23531 + GntR
TC HRGMv2_1396_5 HRGMv2_1396_5_14 23838 25154 + 3.A.1.1.45
TC HRGMv2_1396_5 HRGMv2_1396_5_15 25242 26096 + 3.A.1.1.45
TC HRGMv2_1396_5 HRGMv2_1396_5_16 26096 26935 + 3.A.1.1.45
TC HRGMv2_1396_5 HRGMv2_1396_5_17 27004 28203 + 3.A.1.1.22
CAZyme HRGMv2_1396_5 HRGMv2_1396_5_18 28659 30926 - GT35
CAZyme HRGMv2_1396_5 HRGMv2_1396_5_19 31055 32560 - GH77
Gene ID: HRGMv2_1396_5_11
Type: TC
Location: 20137 - 22587 (-)
Gene ID: HRGMv2_1396_5_12
Type:
Location: 22609 - 22728 (+)
Gene ID: HRGMv2_1396_5_13
Type: TF
Location: 22812 - 23531 (+)
Gene ID: HRGMv2_1396_5_14
Type: TC
Location: 23838 - 25154 (+)
Gene ID: HRGMv2_1396_5_15
Type: TC
Location: 25242 - 26096 (+)
Gene ID: HRGMv2_1396_5_16
Type: TC
Location: 26096 - 26935 (+)
Gene ID: HRGMv2_1396_5_17
Type: TC
Location: 27004 - 28203 (+)
Gene ID: HRGMv2_1396_5_18
Type: CAZyme
Location: 28659 - 30926 (-)
Gene ID: HRGMv2_1396_5_19
Type: CAZyme
Location: 31055 - 32560 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List