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Cluster: HRGMv2_1396_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1396_4 HRGMv2_1396_4_135 150654 151823 - CE9
STP HRGMv2_1396_4 HRGMv2_1396_4_136 151943 153109 - SIS | SIS
TF HRGMv2_1396_4 HRGMv2_1396_4_137 153224 153955 - GntR
TC HRGMv2_1396_4 HRGMv2_1396_4_138 154140 155222 - 4.A.6.1.4
TC HRGMv2_1396_4 HRGMv2_1396_4_139 155212 156012 - 4.A.6.1.4
TC HRGMv2_1396_4 HRGMv2_1396_4_140 156103 156585 - 4.A.6.1.4
pfam HRGMv2_1396_4 HRGMv2_1396_4_141 156622 156903 - YajC
TC HRGMv2_1396_4 HRGMv2_1396_4_142 156903 157346 - 4.A.6.1.16
Gene ID: HRGMv2_1396_4_135
Type: CAZyme
Location: 150654 - 151823 (-)
Gene ID: HRGMv2_1396_4_136
Type: STP
Location: 151943 - 153109 (-)
Gene ID: HRGMv2_1396_4_137
Type: TF
Location: 153224 - 153955 (-)
Gene ID: HRGMv2_1396_4_138
Type: TC
Location: 154140 - 155222 (-)
Gene ID: HRGMv2_1396_4_139
Type: TC
Location: 155212 - 156012 (-)
Gene ID: HRGMv2_1396_4_140
Type: TC
Location: 156103 - 156585 (-)
Gene ID: HRGMv2_1396_4_141
Type: pfam
Location: 156622 - 156903 (-)
Gene ID: HRGMv2_1396_4_142
Type: TC
Location: 156903 - 157346 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1396_4_141 vegan > omnivore 1.12651 0.00566

🧭 Explore Read Mapping of CGC

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