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Cluster: HRGMv2_1396_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1396_4 HRGMv2_1396_4_102 118454 118792 - 4.A.3.1.2
TF HRGMv2_1396_4 HRGMv2_1396_4_103 119007 120011 - LacI
TC HRGMv2_1396_4 HRGMv2_1396_4_104 120369 122135 + 4.A.3.1.1
CAZyme HRGMv2_1396_4 HRGMv2_1396_4_105 122202 123641 + GH1
TF HRGMv2_1396_4 HRGMv2_1396_4_106 123919 124956 - LacI
CAZyme HRGMv2_1396_4 HRGMv2_1396_4_107 125298 126740 + GH1
TC HRGMv2_1396_4 HRGMv2_1396_4_108 126917 128677 + 4.A.3.1.1
TF HRGMv2_1396_4 HRGMv2_1396_4_109 128851 129861 - LacI
TC HRGMv2_1396_4 HRGMv2_1396_4_110 130138 131922 + 4.A.3.1.1
CAZyme HRGMv2_1396_4 HRGMv2_1396_4_111 131999 133420 + GH1
Gene ID: HRGMv2_1396_4_102
Type: TC
Location: 118454 - 118792 (-)
Gene ID: HRGMv2_1396_4_103
Type: TF
Location: 119007 - 120011 (-)
Gene ID: HRGMv2_1396_4_104
Type: TC
Location: 120369 - 122135 (+)
Gene ID: HRGMv2_1396_4_105
Type: CAZyme
Location: 122202 - 123641 (+)
Gene ID: HRGMv2_1396_4_106
Type: TF
Location: 123919 - 124956 (-)
Gene ID: HRGMv2_1396_4_107
Type: CAZyme
Location: 125298 - 126740 (+)
Gene ID: HRGMv2_1396_4_108
Type: TC
Location: 126917 - 128677 (+)
Gene ID: HRGMv2_1396_4_109
Type: TF
Location: 128851 - 129861 (-)
Gene ID: HRGMv2_1396_4_110
Type: TC
Location: 130138 - 131922 (+)
Gene ID: HRGMv2_1396_4_111
Type: CAZyme
Location: 131999 - 133420 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1396_4_106 vegetarian > omnivore 1.00713 0.03181

🧭 Explore Read Mapping of CGC

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