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Cluster: HRGMv2_1396_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1396_1 HRGMv2_1396_1_7 7835 8596 + 9.B.18.1.2
CAZyme HRGMv2_1396_1 HRGMv2_1396_1_8 8597 9721 + GT4
CAZyme HRGMv2_1396_1 HRGMv2_1396_1_9 9718 11001 + GT4
CAZyme HRGMv2_1396_1 HRGMv2_1396_1_10 10994 12007 + GT32
CAZyme HRGMv2_1396_1 HRGMv2_1396_1_11 12026 13033 + GT2
pfam HRGMv2_1396_1 HRGMv2_1396_1_12 13036 14130 + PS_pyruv_trans
pfam HRGMv2_1396_1 HRGMv2_1396_1_13 14123 15364 + Wzy_C
CAZyme HRGMv2_1396_1 HRGMv2_1396_1_14 15361 16302 + GT2
Gene ID: HRGMv2_1396_1_7
Type: TC
Location: 7835 - 8596 (+)
Gene ID: HRGMv2_1396_1_8
Type: CAZyme
Location: 8597 - 9721 (+)
Gene ID: HRGMv2_1396_1_9
Type: CAZyme
Location: 9718 - 11001 (+)
Gene ID: HRGMv2_1396_1_10
Type: CAZyme
Location: 10994 - 12007 (+)
Gene ID: HRGMv2_1396_1_11
Type: CAZyme
Location: 12026 - 13033 (+)
Gene ID: HRGMv2_1396_1_12
Type: pfam
Location: 13036 - 14130 (+)
Gene ID: HRGMv2_1396_1_13
Type: pfam
Location: 14123 - 15364 (+)
Gene ID: HRGMv2_1396_1_14
Type: CAZyme
Location: 15361 - 16302 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1396_1_8 vegetarian > vegan 2.58047 0.03024
HRGMv2_1396_1_9 vegetarian > vegan 1.72012 0.03024
HRGMv2_1396_1_10 vegetarian > vegan 1.19399 0.03024

🧭 Explore Read Mapping of CGC

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