Cluster: HRGMv2_1391_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1391
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1391_3 | HRGMv2_1391_3_116 | 121477 | 122244 | - | 3.A.1.103.1 |
| TC | HRGMv2_1391_3 | HRGMv2_1391_3_117 | 122257 | 123102 | - | 3.A.1.103.6 |
| CAZyme | HRGMv2_1391_3 | HRGMv2_1391_3_118 | 123264 | 124193 | + | GT81 |
| CAZyme | HRGMv2_1391_3 | HRGMv2_1391_3_119 | 124225 | 126066 | - | GT2 |
| pfam | HRGMv2_1391_3 | HRGMv2_1391_3_120 | 126099 | 127286 | - | LicD |
| CAZyme | HRGMv2_1391_3 | HRGMv2_1391_3_121 | 127386 | 129266 | - | GT2 |
Gene ID: HRGMv2_1391_3_116
Type: TC
Location: 121477 - 122244 (-)
Type: TC
Location: 121477 - 122244 (-)
Gene ID: HRGMv2_1391_3_117
Type: TC
Location: 122257 - 123102 (-)
Type: TC
Location: 122257 - 123102 (-)
Gene ID: HRGMv2_1391_3_118
Type: CAZyme
Location: 123264 - 124193 (+)
Type: CAZyme
Location: 123264 - 124193 (+)
Gene ID: HRGMv2_1391_3_119
Type: CAZyme
Location: 124225 - 126066 (-)
Type: CAZyme
Location: 124225 - 126066 (-)
Gene ID: HRGMv2_1391_3_120
Type: pfam
Location: 126099 - 127286 (-)
Type: pfam
Location: 126099 - 127286 (-)
Gene ID: HRGMv2_1391_3_121
Type: CAZyme
Location: 127386 - 129266 (-)
Type: CAZyme
Location: 127386 - 129266 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902493915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1391_3_117 | vegan > omnivore | 2.19664 | 0.01057 |
| HRGMv2_1391_3_118 | vegan > omnivore | 1.53315 | 0.01057 |
| HRGMv2_1391_3_119 | vegan > omnivore | 17.35456 | 0.01057 |
| HRGMv2_1391_3_119 | vegetarian > omnivore | 13.26340 | 0.01918 |
| HRGMv2_1391_3_120 | vegan > omnivore | 17.55233 | 0.01057 |
| HRGMv2_1391_3_121 | vegan > omnivore | 10.27711 | 0.01057 |