Cluster: HRGMv2_1385_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1385
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1385_5 | HRGMv2_1385_5_59 | 76105 | 76593 | + | 4.A.6.1.9 |
| TC | HRGMv2_1385_5 | HRGMv2_1385_5_60 | 76666 | 77523 | + | 4.A.6.1.1 |
| TC | HRGMv2_1385_5 | HRGMv2_1385_5_61 | 77523 | 78350 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_1385_5 | HRGMv2_1385_5_62 | 78546 | 78872 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1385_5 | HRGMv2_1385_5_63 | 78977 | 79417 | + | MarR |
| CAZyme | HRGMv2_1385_5 | HRGMv2_1385_5_64 | 79929 | 86342 | + | GH31_18 |
Gene ID: HRGMv2_1385_5_59
Type: TC
Location: 76105 - 76593 (+)
Type: TC
Location: 76105 - 76593 (+)
Gene ID: HRGMv2_1385_5_60
Type: TC
Location: 76666 - 77523 (+)
Type: TC
Location: 76666 - 77523 (+)
Gene ID: HRGMv2_1385_5_61
Type: TC
Location: 77523 - 78350 (+)
Type: TC
Location: 77523 - 78350 (+)
Gene ID: HRGMv2_1385_5_62
Type:
Location: 78546 - 78872 (+)
Type:
Location: 78546 - 78872 (+)
Gene ID: HRGMv2_1385_5_63
Type: TF
Location: 78977 - 79417 (+)
Type: TF
Location: 78977 - 79417 (+)
Gene ID: HRGMv2_1385_5_64
Type: CAZyme
Location: 79929 - 86342 (+)
Type: CAZyme
Location: 79929 - 86342 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp959606495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1385_5_64 | vegetarian > omnivore | 1.38517 | 0.04211 |
| HRGMv2_1385_5_64 | vegetarian > vegan | 2.03580 | 0.01416 |