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Cluster: HRGMv2_1385_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1385_33 HRGMv2_1385_33_1 604 1047 + 4.A.6.1.16
pfam HRGMv2_1385_33 HRGMv2_1385_33_2 1047 1328 + YajC
TC HRGMv2_1385_33 HRGMv2_1385_33_3 1365 1847 + 4.A.6.1.4
TC HRGMv2_1385_33 HRGMv2_1385_33_4 1938 2738 + 4.A.6.1.4
TC HRGMv2_1385_33 HRGMv2_1385_33_5 2728 3810 + 4.A.6.1.4
TF HRGMv2_1385_33 HRGMv2_1385_33_6 3996 4727 + GntR
STP HRGMv2_1385_33 HRGMv2_1385_33_7 4842 6008 + SIS | SIS
CAZyme HRGMv2_1385_33 HRGMv2_1385_33_8 6127 7296 + CE9
Gene ID: HRGMv2_1385_33_1
Type: TC
Location: 604 - 1047 (+)
Gene ID: HRGMv2_1385_33_2
Type: pfam
Location: 1047 - 1328 (+)
Gene ID: HRGMv2_1385_33_3
Type: TC
Location: 1365 - 1847 (+)
Gene ID: HRGMv2_1385_33_4
Type: TC
Location: 1938 - 2738 (+)
Gene ID: HRGMv2_1385_33_5
Type: TC
Location: 2728 - 3810 (+)
Gene ID: HRGMv2_1385_33_6
Type: TF
Location: 3996 - 4727 (+)
Gene ID: HRGMv2_1385_33_7
Type: STP
Location: 4842 - 6008 (+)
Gene ID: HRGMv2_1385_33_8
Type: CAZyme
Location: 6127 - 7296 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1385_33_2 vegan > omnivore 1.05255 0.00863

🧭 Explore Read Mapping of CGC

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