Cluster: HRGMv2_1255_CGC5
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_1255
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1255_2 | HRGMv2_1255_2_3 | 2515 | 3570 | + | 9.B.18.2.1 |
| pfam | HRGMv2_1255_2 | HRGMv2_1255_2_4 | 3572 | 4789 | + | Epimerase | Polysacc_synt_C |
| CAZyme | HRGMv2_1255_2 | HRGMv2_1255_2_5 | 4849 | 5913 | + | GT4 |
| pfam | HRGMv2_1255_2 | HRGMv2_1255_2_6 | 5935 | 7110 | + | Epimerase_2 |
| CAZyme | HRGMv2_1255_2 | HRGMv2_1255_2_7 | 7110 | 8351 | + | GT4 |
| CAZyme | HRGMv2_1255_2 | HRGMv2_1255_2_8 | 8390 | 9088 | + | GT2 |
| pfam | HRGMv2_1255_2 | HRGMv2_1255_2_9 | 9088 | 9444 | + | DUF2304 |
| pfam | HRGMv2_1255_2 | HRGMv2_1255_2_10 | 9471 | 11654 | + | DUF7654 | DUF7657 |
| CAZyme | HRGMv2_1255_2 | HRGMv2_1255_2_11 | 11731 | 14130 | - | GT2 | GT2 |
| CAZyme | HRGMv2_1255_2 | HRGMv2_1255_2_12 | 14206 | 15447 | - | GT111 |
Gene ID: HRGMv2_1255_2_3
Type: TC
Location: 2515 - 3570 (+)
Type: TC
Location: 2515 - 3570 (+)
Gene ID: HRGMv2_1255_2_4
Type: pfam
Location: 3572 - 4789 (+)
Type: pfam
Location: 3572 - 4789 (+)
Gene ID: HRGMv2_1255_2_5
Type: CAZyme
Location: 4849 - 5913 (+)
Type: CAZyme
Location: 4849 - 5913 (+)
Gene ID: HRGMv2_1255_2_6
Type: pfam
Location: 5935 - 7110 (+)
Type: pfam
Location: 5935 - 7110 (+)
Gene ID: HRGMv2_1255_2_7
Type: CAZyme
Location: 7110 - 8351 (+)
Type: CAZyme
Location: 7110 - 8351 (+)
Gene ID: HRGMv2_1255_2_8
Type: CAZyme
Location: 8390 - 9088 (+)
Type: CAZyme
Location: 8390 - 9088 (+)
Gene ID: HRGMv2_1255_2_9
Type: pfam
Location: 9088 - 9444 (+)
Type: pfam
Location: 9088 - 9444 (+)
Gene ID: HRGMv2_1255_2_10
Type: pfam
Location: 9471 - 11654 (+)
Type: pfam
Location: 9471 - 11654 (+)
Gene ID: HRGMv2_1255_2_11
Type: CAZyme
Location: 11731 - 14130 (-)
Type: CAZyme
Location: 11731 - 14130 (-)
Gene ID: HRGMv2_1255_2_12
Type: CAZyme
Location: 14206 - 15447 (-)
Type: CAZyme
Location: 14206 - 15447 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905215905
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1255_2_4 | vegetarian > omnivore | 1.40510 | 0.03374 |
| HRGMv2_1255_2_4 | vegetarian > vegan | 1.56984 | 0.03145 |
| HRGMv2_1255_2_7 | vegetarian > omnivore | 1.03555 | 0.03374 |
| HRGMv2_1255_2_8 | vegan > omnivore | 1.13640 | 0.01207 |
| HRGMv2_1255_2_8 | vegetarian > omnivore | 2.30504 | 0.02773 |
| HRGMv2_1255_2_8 | vegetarian > vegan | 1.16864 | 0.04195 |
| HRGMv2_1255_2_9 | vegetarian > omnivore | 1.04657 | 0.03374 |
| HRGMv2_1255_2_11 | vegan > omnivore | 1.96727 | 0.01207 |
| HRGMv2_1255_2_11 | vegetarian > omnivore | 2.70432 | 0.03374 |
| HRGMv2_1255_2_12 | vegetarian > omnivore | 1.44433 | 0.02773 |