Cluster: HRGMv2_1214_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1214
- CGC Family ID: CGCFAM_00008
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_912 | 1068870 | 1070054 | - | 9.B.144.1.5 |
| pfam | HRGMv2_1214_1 | HRGMv2_1214_1_913 | 1070077 | 1071282 | - | YfhO |
| CAZyme | HRGMv2_1214_1 | HRGMv2_1214_1_914 | 1071425 | 1072234 | - | GT2 |
| CAZyme | HRGMv2_1214_1 | HRGMv2_1214_1_915 | 1072240 | 1073211 | - | GT81 |
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_916 | 1073372 | 1074217 | + | 3.A.1.103.6 |
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_917 | 1074229 | 1074996 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1214_1_912
Type: TC
Location: 1068870 - 1070054 (-)
Type: TC
Location: 1068870 - 1070054 (-)
Gene ID: HRGMv2_1214_1_913
Type: pfam
Location: 1070077 - 1071282 (-)
Type: pfam
Location: 1070077 - 1071282 (-)
Gene ID: HRGMv2_1214_1_914
Type: CAZyme
Location: 1071425 - 1072234 (-)
Type: CAZyme
Location: 1071425 - 1072234 (-)
Gene ID: HRGMv2_1214_1_915
Type: CAZyme
Location: 1072240 - 1073211 (-)
Type: CAZyme
Location: 1072240 - 1073211 (-)
Gene ID: HRGMv2_1214_1_916
Type: TC
Location: 1073372 - 1074217 (+)
Type: TC
Location: 1073372 - 1074217 (+)
Gene ID: HRGMv2_1214_1_917
Type: TC
Location: 1074229 - 1074996 (+)
Type: TC
Location: 1074229 - 1074996 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1214_1_913 | vegan > omnivore | 1.47913 | 0.00566 |