dbCAN Logo

Cluster: HRGMv2_1214_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1214_1 HRGMv2_1214_1_361 434560 436254 + 4.A.3.1.1
STP HRGMv2_1214_1 HRGMv2_1214_1_362 436417 436755 + DeoRC
pfam HRGMv2_1214_1 HRGMv2_1214_1_363 436793 438025 - Fic
CAZyme HRGMv2_1214_1 HRGMv2_1214_1_364 438395 439816 - GH1
TC HRGMv2_1214_1 HRGMv2_1214_1_365 439892 441670 - 4.A.3.1.1
TF HRGMv2_1214_1 HRGMv2_1214_1_366 441946 442956 + LacI
TC HRGMv2_1214_1 HRGMv2_1214_1_367 443370 445130 - 4.A.3.1.1
CAZyme HRGMv2_1214_1 HRGMv2_1214_1_368 445307 446749 - GH1
TF HRGMv2_1214_1 HRGMv2_1214_1_369 447091 448128 + LacI
CAZyme HRGMv2_1214_1 HRGMv2_1214_1_370 448405 449844 - GH1
TC HRGMv2_1214_1 HRGMv2_1214_1_371 449911 451686 - 4.A.3.1.1
TF HRGMv2_1214_1 HRGMv2_1214_1_372 452044 453048 + LacI
TC HRGMv2_1214_1 HRGMv2_1214_1_373 453263 453601 + 4.A.3.1.2
Gene ID: HRGMv2_1214_1_361
Type: TC
Location: 434560 - 436254 (+)
Gene ID: HRGMv2_1214_1_362
Type: STP
Location: 436417 - 436755 (+)
Gene ID: HRGMv2_1214_1_363
Type: pfam
Location: 436793 - 438025 (-)
Gene ID: HRGMv2_1214_1_364
Type: CAZyme
Location: 438395 - 439816 (-)
Gene ID: HRGMv2_1214_1_365
Type: TC
Location: 439892 - 441670 (-)
Gene ID: HRGMv2_1214_1_366
Type: TF
Location: 441946 - 442956 (+)
Gene ID: HRGMv2_1214_1_367
Type: TC
Location: 443370 - 445130 (-)
Gene ID: HRGMv2_1214_1_368
Type: CAZyme
Location: 445307 - 446749 (-)
Gene ID: HRGMv2_1214_1_369
Type: TF
Location: 447091 - 448128 (+)
Gene ID: HRGMv2_1214_1_370
Type: CAZyme
Location: 448405 - 449844 (-)
Gene ID: HRGMv2_1214_1_371
Type: TC
Location: 449911 - 451686 (-)
Gene ID: HRGMv2_1214_1_372
Type: TF
Location: 452044 - 453048 (+)
Gene ID: HRGMv2_1214_1_373
Type: TC
Location: 453263 - 453601 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1214_1_369 vegetarian > omnivore 1.03045 0.02258

🧭 Explore Read Mapping of CGC

← Back to Cluster List