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Cluster: HRGMv2_1214_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1214_1 HRGMv2_1214_1_344 418773 419216 + 4.A.6.1.16
pfam HRGMv2_1214_1 HRGMv2_1214_1_345 419216 419497 + YajC
TC HRGMv2_1214_1 HRGMv2_1214_1_346 419534 420016 + 4.A.6.1.4
TC HRGMv2_1214_1 HRGMv2_1214_1_347 420107 420907 + 4.A.6.1.4
TC HRGMv2_1214_1 HRGMv2_1214_1_348 420897 421979 + 4.A.6.1.4
TF HRGMv2_1214_1 HRGMv2_1214_1_349 422165 422896 + GntR
STP HRGMv2_1214_1 HRGMv2_1214_1_350 423011 424177 + SIS | SIS
CAZyme HRGMv2_1214_1 HRGMv2_1214_1_351 424296 425465 + CE9
Gene ID: HRGMv2_1214_1_344
Type: TC
Location: 418773 - 419216 (+)
Gene ID: HRGMv2_1214_1_345
Type: pfam
Location: 419216 - 419497 (+)
Gene ID: HRGMv2_1214_1_346
Type: TC
Location: 419534 - 420016 (+)
Gene ID: HRGMv2_1214_1_347
Type: TC
Location: 420107 - 420907 (+)
Gene ID: HRGMv2_1214_1_348
Type: TC
Location: 420897 - 421979 (+)
Gene ID: HRGMv2_1214_1_349
Type: TF
Location: 422165 - 422896 (+)
Gene ID: HRGMv2_1214_1_350
Type: STP
Location: 423011 - 424177 (+)
Gene ID: HRGMv2_1214_1_351
Type: CAZyme
Location: 424296 - 425465 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1214_1_345 vegan > omnivore 1.10672 0.00566

🧭 Explore Read Mapping of CGC

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