Cluster: HRGMv2_1214_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1214
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_1957 | 2291884 | 2292420 | - | 4.A.1.2.6 |
| CAZyme | HRGMv2_1214_1 | HRGMv2_1214_1_1958 | 2292688 | 2294136 | - | GH1 |
| TF | HRGMv2_1214_1 | HRGMv2_1214_1_1959 | 2294309 | 2295316 | - | HTH_AraC |
| CAZyme | HRGMv2_1214_1 | HRGMv2_1214_1_1960 | 2295433 | 2298033 | + | GH106 |
| TF | HRGMv2_1214_1 | HRGMv2_1214_1_1961 | 2298076 | 2298930 | + | HTH_6 |
| STP | HRGMv2_1214_1 | HRGMv2_1214_1_1962 | 2299280 | 2299963 | - | Pribosyltran |
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_1963 | 2300402 | 2303170 | + | 3.A.3.4.1 |
Gene ID: HRGMv2_1214_1_1957
Type: TC
Location: 2291884 - 2292420 (-)
Type: TC
Location: 2291884 - 2292420 (-)
Gene ID: HRGMv2_1214_1_1958
Type: CAZyme
Location: 2292688 - 2294136 (-)
Type: CAZyme
Location: 2292688 - 2294136 (-)
Gene ID: HRGMv2_1214_1_1959
Type: TF
Location: 2294309 - 2295316 (-)
Type: TF
Location: 2294309 - 2295316 (-)
Gene ID: HRGMv2_1214_1_1960
Type: CAZyme
Location: 2295433 - 2298033 (+)
Type: CAZyme
Location: 2295433 - 2298033 (+)
Gene ID: HRGMv2_1214_1_1961
Type: TF
Location: 2298076 - 2298930 (+)
Type: TF
Location: 2298076 - 2298930 (+)
Gene ID: HRGMv2_1214_1_1962
Type: STP
Location: 2299280 - 2299963 (-)
Type: STP
Location: 2299280 - 2299963 (-)
Gene ID: HRGMv2_1214_1_1963
Type: TC
Location: 2300402 - 2303170 (+)
Type: TC
Location: 2300402 - 2303170 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.