Cluster: HRGMv2_1214_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1214
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_1753 | 2042242 | 2044569 | - | 9.A.8.1.6 |
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_1754 | 2044693 | 2044914 | - | 9.A.8.1.6 |
| STP | HRGMv2_1214_1 | HRGMv2_1214_1_1755 | 2044954 | 2045196 | - | FeoA |
| STP | HRGMv2_1214_1 | HRGMv2_1214_1_1756 | 2045385 | 2045633 | - | PTS-HPr |
| TC | HRGMv2_1214_1 | HRGMv2_1214_1_1757 | 2046056 | 2047519 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | HRGMv2_1214_1 | HRGMv2_1214_1_1758 | 2047673 | 2048128 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1214_1 | HRGMv2_1214_1_1759 | 2048132 | 2051140 | - | GH2 |
Gene ID: HRGMv2_1214_1_1753
Type: TC
Location: 2042242 - 2044569 (-)
Type: TC
Location: 2042242 - 2044569 (-)
Gene ID: HRGMv2_1214_1_1754
Type: TC
Location: 2044693 - 2044914 (-)
Type: TC
Location: 2044693 - 2044914 (-)
Gene ID: HRGMv2_1214_1_1755
Type: STP
Location: 2044954 - 2045196 (-)
Type: STP
Location: 2044954 - 2045196 (-)
Gene ID: HRGMv2_1214_1_1756
Type: STP
Location: 2045385 - 2045633 (-)
Type: STP
Location: 2045385 - 2045633 (-)
Gene ID: HRGMv2_1214_1_1757
Type: TC
Location: 2046056 - 2047519 (-)
Type: TC
Location: 2046056 - 2047519 (-)
Gene ID: HRGMv2_1214_1_1758
Type:
Location: 2047673 - 2048128 (-)
Type:
Location: 2047673 - 2048128 (-)
Gene ID: HRGMv2_1214_1_1759
Type: CAZyme
Location: 2048132 - 2051140 (-)
Type: CAZyme
Location: 2048132 - 2051140 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900761615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.