Cluster: HRGMv2_1203_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1203
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1203_18 | HRGMv2_1203_18_13 | 12344 | 13759 | + | 4.A.1.1.7 |
| TF | HRGMv2_1203_18 | HRGMv2_1203_18_14 | 13992 | 14723 | + | GntR |
| CAZyme | HRGMv2_1203_18 | HRGMv2_1203_18_15 | 14867 | 16036 | + | CE9 |
| pfam | HRGMv2_1203_18 | HRGMv2_1203_18_16 | 16069 | 16542 | + | DUF386 |
| CAZyme | HRGMv2_1203_18 | HRGMv2_1203_18_17 | 17026 | 18822 | + | GH35 |
| TC | HRGMv2_1203_18 | HRGMv2_1203_18_18 | 18825 | 19289 | + | 4.A.6.1.18 |
| TC | HRGMv2_1203_18 | HRGMv2_1203_18_19 | 19383 | 20270 | + | 4.A.6.1.18 |
| TC | HRGMv2_1203_18 | HRGMv2_1203_18_20 | 20260 | 21099 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_1203_18 | HRGMv2_1203_18_21 | 21288 | 21911 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1203_18 | HRGMv2_1203_18_22 | 21993 | 22421 | + | 4.A.6.1.8 |
| TF | HRGMv2_1203_18 | HRGMv2_1203_18_23 | 22509 | 23243 | + | GntR |
| STP | HRGMv2_1203_18 | HRGMv2_1203_18_24 | 23355 | 24521 | + | SIS | SIS |
| CAZyme | HRGMv2_1203_18 | HRGMv2_1203_18_25 | 24639 | 25808 | + | CE9 |
Gene ID: HRGMv2_1203_18_13
Type: TC
Location: 12344 - 13759 (+)
Type: TC
Location: 12344 - 13759 (+)
Gene ID: HRGMv2_1203_18_14
Type: TF
Location: 13992 - 14723 (+)
Type: TF
Location: 13992 - 14723 (+)
Gene ID: HRGMv2_1203_18_15
Type: CAZyme
Location: 14867 - 16036 (+)
Type: CAZyme
Location: 14867 - 16036 (+)
Gene ID: HRGMv2_1203_18_16
Type: pfam
Location: 16069 - 16542 (+)
Type: pfam
Location: 16069 - 16542 (+)
Gene ID: HRGMv2_1203_18_17
Type: CAZyme
Location: 17026 - 18822 (+)
Type: CAZyme
Location: 17026 - 18822 (+)
Gene ID: HRGMv2_1203_18_18
Type: TC
Location: 18825 - 19289 (+)
Type: TC
Location: 18825 - 19289 (+)
Gene ID: HRGMv2_1203_18_19
Type: TC
Location: 19383 - 20270 (+)
Type: TC
Location: 19383 - 20270 (+)
Gene ID: HRGMv2_1203_18_20
Type: TC
Location: 20260 - 21099 (+)
Type: TC
Location: 20260 - 21099 (+)
Gene ID: HRGMv2_1203_18_21
Type:
Location: 21288 - 21911 (+)
Type:
Location: 21288 - 21911 (+)
Gene ID: HRGMv2_1203_18_22
Type: TC
Location: 21993 - 22421 (+)
Type: TC
Location: 21993 - 22421 (+)
Gene ID: HRGMv2_1203_18_23
Type: TF
Location: 22509 - 23243 (+)
Type: TF
Location: 22509 - 23243 (+)
Gene ID: HRGMv2_1203_18_24
Type: STP
Location: 23355 - 24521 (+)
Type: STP
Location: 23355 - 24521 (+)
Gene ID: HRGMv2_1203_18_25
Type: CAZyme
Location: 24639 - 25808 (+)
Type: CAZyme
Location: 24639 - 25808 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1203_18_14 | vegetarian > vegan | 3.39195 | 0.02017 |
| HRGMv2_1203_18_17 | vegetarian > vegan | 2.79898 | 0.02017 |
| HRGMv2_1203_18_18 | vegetarian > vegan | 3.42375 | 0.02017 |
| HRGMv2_1203_18_20 | vegetarian > vegan | 2.55013 | 0.02017 |