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Cluster: HRGMv2_1203_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1203_15 HRGMv2_1203_15_14 17005 18387 - GH4
TC HRGMv2_1203_15 HRGMv2_1203_15_15 18391 20007 - 4.A.1.1.3
pfam HRGMv2_1203_15 HRGMv2_1203_15_16 20107 20973 - PRD | PRD | CAT_RBD
TC HRGMv2_1203_15 HRGMv2_1203_15_17 20980 21492 - 4.A.1.2.5
STP HRGMv2_1203_15 HRGMv2_1203_15_18 21836 22078 - Fer4 | Fer4
NULL(UNKNOWN) HRGMv2_1203_15 HRGMv2_1203_15_19 22238 22426 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1203_15 HRGMv2_1203_15_20 23254 25503 - 1.I.1.1.3
STP HRGMv2_1203_15 HRGMv2_1203_15_21 26092 27054 + FHA
STP HRGMv2_1203_15 HRGMv2_1203_15_22 27226 29310 + Pkinase
TC HRGMv2_1203_15 HRGMv2_1203_15_23 29963 32305 + 3.A.3.5.15
Gene ID: HRGMv2_1203_15_14
Type: CAZyme
Location: 17005 - 18387 (-)
Gene ID: HRGMv2_1203_15_15
Type: TC
Location: 18391 - 20007 (-)
Gene ID: HRGMv2_1203_15_16
Type: pfam
Location: 20107 - 20973 (-)
Gene ID: HRGMv2_1203_15_17
Type: TC
Location: 20980 - 21492 (-)
Gene ID: HRGMv2_1203_15_18
Type: STP
Location: 21836 - 22078 (-)
Gene ID: HRGMv2_1203_15_19
Type:
Location: 22238 - 22426 (+)
Gene ID: HRGMv2_1203_15_20
Type: TC
Location: 23254 - 25503 (-)
Gene ID: HRGMv2_1203_15_21
Type: STP
Location: 26092 - 27054 (+)
Gene ID: HRGMv2_1203_15_22
Type: STP
Location: 27226 - 29310 (+)
Gene ID: HRGMv2_1203_15_23
Type: TC
Location: 29963 - 32305 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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