Cluster: HRGMv2_1203_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1203
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1203_12 | HRGMv2_1203_12_40 | 54592 | 56151 | + | 2.A.2.5.1 |
| CAZyme | HRGMv2_1203_12 | HRGMv2_1203_12_41 | 56267 | 57862 | + | GH28 |
| peptidase | HRGMv2_1203_12 | HRGMv2_1203_12_42 | 57967 | 58776 | + | S09.UPW |
| CAZyme | HRGMv2_1203_12 | HRGMv2_1203_12_43 | 58773 | 60962 | + | CE19 | CE8 |
| pfam | HRGMv2_1203_12 | HRGMv2_1203_12_44 | 61010 | 61678 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_1203_12 | HRGMv2_1203_12_45 | 61786 | 63024 | + | GH105 |
Gene ID: HRGMv2_1203_12_40
Type: TC
Location: 54592 - 56151 (+)
Type: TC
Location: 54592 - 56151 (+)
Gene ID: HRGMv2_1203_12_41
Type: CAZyme
Location: 56267 - 57862 (+)
Type: CAZyme
Location: 56267 - 57862 (+)
Gene ID: HRGMv2_1203_12_42
Type: peptidase
Location: 57967 - 58776 (+)
Type: peptidase
Location: 57967 - 58776 (+)
Gene ID: HRGMv2_1203_12_43
Type: CAZyme
Location: 58773 - 60962 (+)
Type: CAZyme
Location: 58773 - 60962 (+)
Gene ID: HRGMv2_1203_12_44
Type: pfam
Location: 61010 - 61678 (+)
Type: pfam
Location: 61010 - 61678 (+)
Gene ID: HRGMv2_1203_12_45
Type: CAZyme
Location: 61786 - 63024 (+)
Type: CAZyme
Location: 61786 - 63024 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1203_12_45 | vegan > omnivore | 1.04875 | 0.01287 |