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Cluster: HRGMv2_1190_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1190_13 HRGMv2_1190_13_41 44328 45497 - CE9
STP HRGMv2_1190_13 HRGMv2_1190_13_42 45616 46782 - SIS | SIS
TF HRGMv2_1190_13 HRGMv2_1190_13_43 46897 47628 - GntR
TC HRGMv2_1190_13 HRGMv2_1190_13_44 47815 48897 - 4.A.6.1.4
TC HRGMv2_1190_13 HRGMv2_1190_13_45 48887 49687 - 4.A.6.1.4
TC HRGMv2_1190_13 HRGMv2_1190_13_46 49778 50260 - 4.A.6.1.4
pfam HRGMv2_1190_13 HRGMv2_1190_13_47 50297 50578 - YajC
TC HRGMv2_1190_13 HRGMv2_1190_13_48 50578 51021 - 4.A.6.1.16
Gene ID: HRGMv2_1190_13_41
Type: CAZyme
Location: 44328 - 45497 (-)
Gene ID: HRGMv2_1190_13_42
Type: STP
Location: 45616 - 46782 (-)
Gene ID: HRGMv2_1190_13_43
Type: TF
Location: 46897 - 47628 (-)
Gene ID: HRGMv2_1190_13_44
Type: TC
Location: 47815 - 48897 (-)
Gene ID: HRGMv2_1190_13_45
Type: TC
Location: 48887 - 49687 (-)
Gene ID: HRGMv2_1190_13_46
Type: TC
Location: 49778 - 50260 (-)
Gene ID: HRGMv2_1190_13_47
Type: pfam
Location: 50297 - 50578 (-)
Gene ID: HRGMv2_1190_13_48
Type: TC
Location: 50578 - 51021 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1190_13_47 vegan > omnivore 1.14918 0.00566

🧭 Explore Read Mapping of CGC

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