Cluster: HRGMv2_1190_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1190
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1190_5 | HRGMv2_1190_5_59 | 63147 | 69560 | - | GH31_18 |
| TF | HRGMv2_1190_5 | HRGMv2_1190_5_60 | 70073 | 70513 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_1190_5 | HRGMv2_1190_5_61 | 70618 | 70944 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1190_5 | HRGMv2_1190_5_62 | 71140 | 71967 | - | 4.A.6.1.6 |
| TC | HRGMv2_1190_5 | HRGMv2_1190_5_63 | 71967 | 72824 | - | 4.A.6.1.1 |
| TC | HRGMv2_1190_5 | HRGMv2_1190_5_64 | 72896 | 73384 | - | 4.A.6.1.9 |
Gene ID: HRGMv2_1190_5_59
Type: CAZyme
Location: 63147 - 69560 (-)
Type: CAZyme
Location: 63147 - 69560 (-)
Gene ID: HRGMv2_1190_5_60
Type: TF
Location: 70073 - 70513 (-)
Type: TF
Location: 70073 - 70513 (-)
Gene ID: HRGMv2_1190_5_61
Type:
Location: 70618 - 70944 (-)
Type:
Location: 70618 - 70944 (-)
Gene ID: HRGMv2_1190_5_62
Type: TC
Location: 71140 - 71967 (-)
Type: TC
Location: 71140 - 71967 (-)
Gene ID: HRGMv2_1190_5_63
Type: TC
Location: 71967 - 72824 (-)
Type: TC
Location: 71967 - 72824 (-)
Gene ID: HRGMv2_1190_5_64
Type: TC
Location: 72896 - 73384 (-)
Type: TC
Location: 72896 - 73384 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905208975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1190_5_59 | vegetarian > omnivore | 1.39809 | 0.02458 |
| HRGMv2_1190_5_59 | vegetarian > vegan | 2.08280 | 0.01195 |