Cluster: HRGMv2_1190_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1190
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1190_1 | HRGMv2_1190_1_10 | 7740 | 8855 | + | GT2 |
| CAZyme | HRGMv2_1190_1 | HRGMv2_1190_1_11 | 8857 | 10035 | + | GT2 |
| pfam | HRGMv2_1190_1 | HRGMv2_1190_1_12 | 10168 | 11253 | - | Acyl_transf_3 |
| CAZyme | HRGMv2_1190_1 | HRGMv2_1190_1_13 | 11260 | 12213 | - | GT2 |
| TC | HRGMv2_1190_1 | HRGMv2_1190_1_14 | 12360 | 13205 | + | 3.A.1.103.6 |
| TC | HRGMv2_1190_1 | HRGMv2_1190_1_15 | 13217 | 13984 | + | 3.A.1.103.1 |
Gene ID: HRGMv2_1190_1_10
Type: CAZyme
Location: 7740 - 8855 (+)
Type: CAZyme
Location: 7740 - 8855 (+)
Gene ID: HRGMv2_1190_1_11
Type: CAZyme
Location: 8857 - 10035 (+)
Type: CAZyme
Location: 8857 - 10035 (+)
Gene ID: HRGMv2_1190_1_12
Type: pfam
Location: 10168 - 11253 (-)
Type: pfam
Location: 10168 - 11253 (-)
Gene ID: HRGMv2_1190_1_13
Type: CAZyme
Location: 11260 - 12213 (-)
Type: CAZyme
Location: 11260 - 12213 (-)
Gene ID: HRGMv2_1190_1_14
Type: TC
Location: 12360 - 13205 (+)
Type: TC
Location: 12360 - 13205 (+)
Gene ID: HRGMv2_1190_1_15
Type: TC
Location: 13217 - 13984 (+)
Type: TC
Location: 13217 - 13984 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905208975
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1190_1_14 | vegan > omnivore | 1.18492 | 0.00566 |