Cluster: HRGMv2_1187_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1187
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1187_8 | HRGMv2_1187_8_16 | 15952 | 17160 | + | 4.A.1.1.7 |
| TF | HRGMv2_1187_8 | HRGMv2_1187_8_17 | 17393 | 18124 | + | GntR |
| CAZyme | HRGMv2_1187_8 | HRGMv2_1187_8_18 | 18268 | 19437 | + | CE9 |
| pfam | HRGMv2_1187_8 | HRGMv2_1187_8_19 | 19512 | 19943 | + | DUF386 |
| CAZyme | HRGMv2_1187_8 | HRGMv2_1187_8_20 | 20429 | 22225 | + | GH35 |
| TC | HRGMv2_1187_8 | HRGMv2_1187_8_21 | 22228 | 22692 | + | 4.A.6.1.18 |
| TC | HRGMv2_1187_8 | HRGMv2_1187_8_22 | 22786 | 23670 | + | 4.A.6.1.18 |
| TC | HRGMv2_1187_8 | HRGMv2_1187_8_23 | 23660 | 24499 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | HRGMv2_1187_8 | HRGMv2_1187_8_24 | 24688 | 25311 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1187_8 | HRGMv2_1187_8_25 | 25393 | 25821 | + | 4.A.6.1.8 |
| TF | HRGMv2_1187_8 | HRGMv2_1187_8_26 | 25909 | 26643 | + | GntR |
| STP | HRGMv2_1187_8 | HRGMv2_1187_8_27 | 26755 | 27921 | + | SIS | SIS |
| CAZyme | HRGMv2_1187_8 | HRGMv2_1187_8_28 | 28038 | 29207 | + | CE9 |
Gene ID: HRGMv2_1187_8_16
Type: TC
Location: 15952 - 17160 (+)
Type: TC
Location: 15952 - 17160 (+)
Gene ID: HRGMv2_1187_8_17
Type: TF
Location: 17393 - 18124 (+)
Type: TF
Location: 17393 - 18124 (+)
Gene ID: HRGMv2_1187_8_18
Type: CAZyme
Location: 18268 - 19437 (+)
Type: CAZyme
Location: 18268 - 19437 (+)
Gene ID: HRGMv2_1187_8_19
Type: pfam
Location: 19512 - 19943 (+)
Type: pfam
Location: 19512 - 19943 (+)
Gene ID: HRGMv2_1187_8_20
Type: CAZyme
Location: 20429 - 22225 (+)
Type: CAZyme
Location: 20429 - 22225 (+)
Gene ID: HRGMv2_1187_8_21
Type: TC
Location: 22228 - 22692 (+)
Type: TC
Location: 22228 - 22692 (+)
Gene ID: HRGMv2_1187_8_22
Type: TC
Location: 22786 - 23670 (+)
Type: TC
Location: 22786 - 23670 (+)
Gene ID: HRGMv2_1187_8_23
Type: TC
Location: 23660 - 24499 (+)
Type: TC
Location: 23660 - 24499 (+)
Gene ID: HRGMv2_1187_8_24
Type:
Location: 24688 - 25311 (+)
Type:
Location: 24688 - 25311 (+)
Gene ID: HRGMv2_1187_8_25
Type: TC
Location: 25393 - 25821 (+)
Type: TC
Location: 25393 - 25821 (+)
Gene ID: HRGMv2_1187_8_26
Type: TF
Location: 25909 - 26643 (+)
Type: TF
Location: 25909 - 26643 (+)
Gene ID: HRGMv2_1187_8_27
Type: STP
Location: 26755 - 27921 (+)
Type: STP
Location: 26755 - 27921 (+)
Gene ID: HRGMv2_1187_8_28
Type: CAZyme
Location: 28038 - 29207 (+)
Type: CAZyme
Location: 28038 - 29207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1187_8_17 | vegetarian > vegan | 3.41466 | 0.02517 |
| HRGMv2_1187_8_20 | vegetarian > vegan | 2.75998 | 0.02517 |
| HRGMv2_1187_8_21 | vegetarian > vegan | 3.32564 | 0.02517 |
| HRGMv2_1187_8_22 | vegetarian > vegan | 2.49621 | 0.04445 |
| HRGMv2_1187_8_23 | vegetarian > vegan | 2.54925 | 0.02517 |