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Cluster: HRGMv2_1187_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1187_4 HRGMv2_1187_4_72 75813 77189 - GH13_20
TC HRGMv2_1187_4 HRGMv2_1187_4_73 77343 78539 - 2.A.1.2.18
NULL(UNKNOWN) HRGMv2_1187_4 HRGMv2_1187_4_74 78715 79467 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1187_4 HRGMv2_1187_4_75 79633 81006 - GH4
TF HRGMv2_1187_4 HRGMv2_1187_4_76 81182 81934 + HTH_6
TC HRGMv2_1187_4 HRGMv2_1187_4_77 81997 83661 - 4.A.1.1.3
TC HRGMv2_1187_4 HRGMv2_1187_4_78 83976 86336 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1187_4 HRGMv2_1187_4_79 86458 86778 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1187_4 HRGMv2_1187_4_80 86826 87725 - S09.UPW
TC HRGMv2_1187_4 HRGMv2_1187_4_81 87972 88535 + 4.A.1.2.6
pfam HRGMv2_1187_4 HRGMv2_1187_4_82 88716 90119 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1187_4 HRGMv2_1187_4_83 90369 91154 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1187_4 HRGMv2_1187_4_84 91315 92295 + 3.A.1.34.1
TC HRGMv2_1187_4 HRGMv2_1187_4_85 92500 93423 + 3.A.1.34.1
TC HRGMv2_1187_4 HRGMv2_1187_4_86 93416 94210 + 3.A.1.34.1
Gene ID: HRGMv2_1187_4_72
Type: CAZyme
Location: 75813 - 77189 (-)
Gene ID: HRGMv2_1187_4_73
Type: TC
Location: 77343 - 78539 (-)
Gene ID: HRGMv2_1187_4_74
Type:
Location: 78715 - 79467 (-)
Gene ID: HRGMv2_1187_4_75
Type: CAZyme
Location: 79633 - 81006 (-)
Gene ID: HRGMv2_1187_4_76
Type: TF
Location: 81182 - 81934 (+)
Gene ID: HRGMv2_1187_4_77
Type: TC
Location: 81997 - 83661 (-)
Gene ID: HRGMv2_1187_4_78
Type: TC
Location: 83976 - 86336 (-)
Gene ID: HRGMv2_1187_4_79
Type:
Location: 86458 - 86778 (-)
Gene ID: HRGMv2_1187_4_80
Type: peptidase
Location: 86826 - 87725 (-)
Gene ID: HRGMv2_1187_4_81
Type: TC
Location: 87972 - 88535 (+)
Gene ID: HRGMv2_1187_4_82
Type: pfam
Location: 88716 - 90119 (+)
Gene ID: HRGMv2_1187_4_83
Type:
Location: 90369 - 91154 (+)
Gene ID: HRGMv2_1187_4_84
Type: TC
Location: 91315 - 92295 (+)
Gene ID: HRGMv2_1187_4_85
Type: TC
Location: 92500 - 93423 (+)
Gene ID: HRGMv2_1187_4_86
Type: TC
Location: 93416 - 94210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1187_4_74 vegan > omnivore 2.15921 0.02258
HRGMv2_1187_4_75 vegan > omnivore 1.88208 0.02258
HRGMv2_1187_4_77 vegan > omnivore 1.30378 0.02258

🧭 Explore Read Mapping of CGC

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