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Cluster: HRGMv2_1187_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1187_26 HRGMv2_1187_26_10 5842 7347 + GH77
CAZyme HRGMv2_1187_26 HRGMv2_1187_26_11 7476 9743 + GT35
TC HRGMv2_1187_26 HRGMv2_1187_26_12 10201 11400 - 3.A.1.1.22
TC HRGMv2_1187_26 HRGMv2_1187_26_13 11469 12308 - 3.A.1.1.45
TC HRGMv2_1187_26 HRGMv2_1187_26_14 12308 13162 - 3.A.1.1.45
TC HRGMv2_1187_26 HRGMv2_1187_26_15 13250 14566 - 3.A.1.1.45
TF HRGMv2_1187_26 HRGMv2_1187_26_16 14873 15592 - GntR
NULL(UNKNOWN) HRGMv2_1187_26 HRGMv2_1187_26_17 15676 15795 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1187_26 HRGMv2_1187_26_18 15817 18267 + 4.A.1.1.8
Gene ID: HRGMv2_1187_26_10
Type: CAZyme
Location: 5842 - 7347 (+)
Gene ID: HRGMv2_1187_26_11
Type: CAZyme
Location: 7476 - 9743 (+)
Gene ID: HRGMv2_1187_26_12
Type: TC
Location: 10201 - 11400 (-)
Gene ID: HRGMv2_1187_26_13
Type: TC
Location: 11469 - 12308 (-)
Gene ID: HRGMv2_1187_26_14
Type: TC
Location: 12308 - 13162 (-)
Gene ID: HRGMv2_1187_26_15
Type: TC
Location: 13250 - 14566 (-)
Gene ID: HRGMv2_1187_26_16
Type: TF
Location: 14873 - 15592 (-)
Gene ID: HRGMv2_1187_26_17
Type:
Location: 15676 - 15795 (-)
Gene ID: HRGMv2_1187_26_18
Type: TC
Location: 15817 - 18267 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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