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Cluster: HRGMv2_1187_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1187_19 HRGMv2_1187_19_19 21515 22441 - CE7
TC HRGMv2_1187_19 HRGMv2_1187_19_20 22573 23400 - 3.A.1.5.27
TC HRGMv2_1187_19 HRGMv2_1187_19_21 23401 25416 - 3.A.1.5.25
TC HRGMv2_1187_19 HRGMv2_1187_19_22 25420 26376 - 3.A.1.5.38
TC HRGMv2_1187_19 HRGMv2_1187_19_23 26534 28147 - 3.A.1.5.27
pfam HRGMv2_1187_19 HRGMv2_1187_19_24 28513 30453 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1187_19 HRGMv2_1187_19_25 30460 32142 - 2.A.66.4.4
Gene ID: HRGMv2_1187_19_19
Type: CAZyme
Location: 21515 - 22441 (-)
Gene ID: HRGMv2_1187_19_20
Type: TC
Location: 22573 - 23400 (-)
Gene ID: HRGMv2_1187_19_21
Type: TC
Location: 23401 - 25416 (-)
Gene ID: HRGMv2_1187_19_22
Type: TC
Location: 25420 - 26376 (-)
Gene ID: HRGMv2_1187_19_23
Type: TC
Location: 26534 - 28147 (-)
Gene ID: HRGMv2_1187_19_24
Type: pfam
Location: 28513 - 30453 (-)
Gene ID: HRGMv2_1187_19_25
Type: TC
Location: 30460 - 32142 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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