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Cluster: HRGMv2_1128_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1128_28 HRGMv2_1128_28_6 5399 7093 + 4.A.3.1.1
STP HRGMv2_1128_28 HRGMv2_1128_28_7 7256 7651 + DeoRC
pfam HRGMv2_1128_28 HRGMv2_1128_28_8 7757 8989 - Fic
CAZyme HRGMv2_1128_28 HRGMv2_1128_28_9 9357 10778 - GH1
TC HRGMv2_1128_28 HRGMv2_1128_28_10 10855 12633 - 4.A.3.1.1
TF HRGMv2_1128_28 HRGMv2_1128_28_11 12909 13919 + LacI
CAZyme HRGMv2_1128_28 HRGMv2_1128_28_12 14103 15542 - GH1
TC HRGMv2_1128_28 HRGMv2_1128_28_13 15609 17384 - 4.A.3.1.1
TF HRGMv2_1128_28 HRGMv2_1128_28_14 17741 18745 + LacI
TC HRGMv2_1128_28 HRGMv2_1128_28_15 18959 19297 + 4.A.3.1.2
Gene ID: HRGMv2_1128_28_6
Type: TC
Location: 5399 - 7093 (+)
Gene ID: HRGMv2_1128_28_7
Type: STP
Location: 7256 - 7651 (+)
Gene ID: HRGMv2_1128_28_8
Type: pfam
Location: 7757 - 8989 (-)
Gene ID: HRGMv2_1128_28_9
Type: CAZyme
Location: 9357 - 10778 (-)
Gene ID: HRGMv2_1128_28_10
Type: TC
Location: 10855 - 12633 (-)
Gene ID: HRGMv2_1128_28_11
Type: TF
Location: 12909 - 13919 (+)
Gene ID: HRGMv2_1128_28_12
Type: CAZyme
Location: 14103 - 15542 (-)
Gene ID: HRGMv2_1128_28_13
Type: TC
Location: 15609 - 17384 (-)
Gene ID: HRGMv2_1128_28_14
Type: TF
Location: 17741 - 18745 (+)
Gene ID: HRGMv2_1128_28_15
Type: TC
Location: 18959 - 19297 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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