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Cluster: HRGMv2_1128_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1128_17 HRGMv2_1128_17_18 17496 18422 - CE7
TC HRGMv2_1128_17 HRGMv2_1128_17_19 18554 19381 - 3.A.1.5.27
TC HRGMv2_1128_17 HRGMv2_1128_17_20 19382 21397 - 3.A.1.5.25
TC HRGMv2_1128_17 HRGMv2_1128_17_21 21401 22357 - 3.A.1.5.38
TC HRGMv2_1128_17 HRGMv2_1128_17_22 22515 24128 - 3.A.1.5.27
pfam HRGMv2_1128_17 HRGMv2_1128_17_23 24494 26434 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1128_17 HRGMv2_1128_17_24 26441 28123 - 2.A.66.4.4
Gene ID: HRGMv2_1128_17_18
Type: CAZyme
Location: 17496 - 18422 (-)
Gene ID: HRGMv2_1128_17_19
Type: TC
Location: 18554 - 19381 (-)
Gene ID: HRGMv2_1128_17_20
Type: TC
Location: 19382 - 21397 (-)
Gene ID: HRGMv2_1128_17_21
Type: TC
Location: 21401 - 22357 (-)
Gene ID: HRGMv2_1128_17_22
Type: TC
Location: 22515 - 24128 (-)
Gene ID: HRGMv2_1128_17_23
Type: pfam
Location: 24494 - 26434 (-)
Gene ID: HRGMv2_1128_17_24
Type: TC
Location: 26441 - 28123 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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