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Cluster: HRGMv2_1128_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1128_7 HRGMv2_1128_7_10 8788 9957 - CE9
STP HRGMv2_1128_7 HRGMv2_1128_7_11 10076 11242 - SIS | SIS
TF HRGMv2_1128_7 HRGMv2_1128_7_12 11357 12088 - GntR
TC HRGMv2_1128_7 HRGMv2_1128_7_13 12274 13356 - 4.A.6.1.4
TC HRGMv2_1128_7 HRGMv2_1128_7_14 13346 14146 - 4.A.6.1.4
TC HRGMv2_1128_7 HRGMv2_1128_7_15 14237 14719 - 4.A.6.1.4
pfam HRGMv2_1128_7 HRGMv2_1128_7_16 14756 15037 - YajC
TC HRGMv2_1128_7 HRGMv2_1128_7_17 15037 15480 - 4.A.6.1.16
Gene ID: HRGMv2_1128_7_10
Type: CAZyme
Location: 8788 - 9957 (-)
Gene ID: HRGMv2_1128_7_11
Type: STP
Location: 10076 - 11242 (-)
Gene ID: HRGMv2_1128_7_12
Type: TF
Location: 11357 - 12088 (-)
Gene ID: HRGMv2_1128_7_13
Type: TC
Location: 12274 - 13356 (-)
Gene ID: HRGMv2_1128_7_14
Type: TC
Location: 13346 - 14146 (-)
Gene ID: HRGMv2_1128_7_15
Type: TC
Location: 14237 - 14719 (-)
Gene ID: HRGMv2_1128_7_16
Type: pfam
Location: 14756 - 15037 (-)
Gene ID: HRGMv2_1128_7_17
Type: TC
Location: 15037 - 15480 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1128_7_16 vegan > omnivore 1.09218 0.00455

🧭 Explore Read Mapping of CGC

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