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Cluster: HRGMv2_1123_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1123_4 HRGMv2_1123_4_7 5756 7510 - 3.D.1.5.1
STP HRGMv2_1123_4 HRGMv2_1123_4_8 7488 9386 - Pyr_redox_2
CAZyme HRGMv2_1123_4 HRGMv2_1123_4_9 9643 11025 - GH4
TC HRGMv2_1123_4 HRGMv2_1123_4_10 11029 12645 - 4.A.1.1.3
pfam HRGMv2_1123_4 HRGMv2_1123_4_11 12745 13611 - PRD | PRD | CAT_RBD
TC HRGMv2_1123_4 HRGMv2_1123_4_12 13618 14130 - 4.A.1.2.11
STP HRGMv2_1123_4 HRGMv2_1123_4_13 14474 15235 - Fer4
TC HRGMv2_1123_4 HRGMv2_1123_4_14 15857 18106 - 1.I.1.1.3
STP HRGMv2_1123_4 HRGMv2_1123_4_15 18614 19576 + FHA
STP HRGMv2_1123_4 HRGMv2_1123_4_16 19748 21832 + Pkinase
TC HRGMv2_1123_4 HRGMv2_1123_4_17 22164 24503 + 3.A.3.5.15
Gene ID: HRGMv2_1123_4_7
Type: TC
Location: 5756 - 7510 (-)
Gene ID: HRGMv2_1123_4_8
Type: STP
Location: 7488 - 9386 (-)
Gene ID: HRGMv2_1123_4_9
Type: CAZyme
Location: 9643 - 11025 (-)
Gene ID: HRGMv2_1123_4_10
Type: TC
Location: 11029 - 12645 (-)
Gene ID: HRGMv2_1123_4_11
Type: pfam
Location: 12745 - 13611 (-)
Gene ID: HRGMv2_1123_4_12
Type: TC
Location: 13618 - 14130 (-)
Gene ID: HRGMv2_1123_4_13
Type: STP
Location: 14474 - 15235 (-)
Gene ID: HRGMv2_1123_4_14
Type: TC
Location: 15857 - 18106 (-)
Gene ID: HRGMv2_1123_4_15
Type: STP
Location: 18614 - 19576 (+)
Gene ID: HRGMv2_1123_4_16
Type: STP
Location: 19748 - 21832 (+)
Gene ID: HRGMv2_1123_4_17
Type: TC
Location: 22164 - 24503 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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