Cluster: HRGMv2_1123_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1123
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1123_2 | HRGMv2_1123_2_59 | 69547 | 70035 | + | 4.A.6.1.9 |
| TC | HRGMv2_1123_2 | HRGMv2_1123_2_60 | 70108 | 70965 | + | 4.A.6.1.1 |
| TC | HRGMv2_1123_2 | HRGMv2_1123_2_61 | 70965 | 71792 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | HRGMv2_1123_2 | HRGMv2_1123_2_62 | 71988 | 72314 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_1123_2 | HRGMv2_1123_2_63 | 72419 | 72859 | + | MarR |
| CAZyme | HRGMv2_1123_2 | HRGMv2_1123_2_64 | 73371 | 79784 | + | GH31_18 |
Gene ID: HRGMv2_1123_2_59
Type: TC
Location: 69547 - 70035 (+)
Type: TC
Location: 69547 - 70035 (+)
Gene ID: HRGMv2_1123_2_60
Type: TC
Location: 70108 - 70965 (+)
Type: TC
Location: 70108 - 70965 (+)
Gene ID: HRGMv2_1123_2_61
Type: TC
Location: 70965 - 71792 (+)
Type: TC
Location: 70965 - 71792 (+)
Gene ID: HRGMv2_1123_2_62
Type:
Location: 71988 - 72314 (+)
Type:
Location: 71988 - 72314 (+)
Gene ID: HRGMv2_1123_2_63
Type: TF
Location: 72419 - 72859 (+)
Type: TF
Location: 72419 - 72859 (+)
Gene ID: HRGMv2_1123_2_64
Type: CAZyme
Location: 73371 - 79784 (+)
Type: CAZyme
Location: 73371 - 79784 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1123_2_64 | vegetarian > omnivore | 1.31130 | 0.02371 |
| HRGMv2_1123_2_64 | vegetarian > vegan | 2.08738 | 0.00313 |