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Cluster: HRGMv2_1123_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1123_1 HRGMv2_1123_1_225 251301 252659 - 2.A.33.1.1
pfam HRGMv2_1123_1 HRGMv2_1123_1_226 252927 253850 - DHH | DHHA2
pfam HRGMv2_1123_1 HRGMv2_1123_1_227 254019 254972 - ROK
TC HRGMv2_1123_1 HRGMv2_1123_1_228 255214 255546 - 4.A.3.2.3
TC HRGMv2_1123_1 HRGMv2_1123_1_229 255556 255858 - 4.A.3.2.9
TC HRGMv2_1123_1 HRGMv2_1123_1_230 256019 256771 - 4.A.3.2.9
NULL(UNKNOWN) HRGMv2_1123_1 HRGMv2_1123_1_231 256768 257361 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1123_1 HRGMv2_1123_1_232 257482 258882 - GH1
Gene ID: HRGMv2_1123_1_225
Type: TC
Location: 251301 - 252659 (-)
Gene ID: HRGMv2_1123_1_226
Type: pfam
Location: 252927 - 253850 (-)
Gene ID: HRGMv2_1123_1_227
Type: pfam
Location: 254019 - 254972 (-)
Gene ID: HRGMv2_1123_1_228
Type: TC
Location: 255214 - 255546 (-)
Gene ID: HRGMv2_1123_1_229
Type: TC
Location: 255556 - 255858 (-)
Gene ID: HRGMv2_1123_1_230
Type: TC
Location: 256019 - 256771 (-)
Gene ID: HRGMv2_1123_1_231
Type:
Location: 256768 - 257361 (-)
Gene ID: HRGMv2_1123_1_232
Type: CAZyme
Location: 257482 - 258882 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1123_1_229 vegan > omnivore 1.03032 0.00701

🧭 Explore Read Mapping of CGC

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