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Cluster: HRGMv2_1123_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1123_1 HRGMv2_1123_1_193 219972 221141 - CE9
STP HRGMv2_1123_1 HRGMv2_1123_1_194 221259 222425 - SIS | SIS
TF HRGMv2_1123_1 HRGMv2_1123_1_195 222540 223271 - GntR
TC HRGMv2_1123_1 HRGMv2_1123_1_196 223457 224539 - 4.A.6.1.4
TC HRGMv2_1123_1 HRGMv2_1123_1_197 224529 225329 - 4.A.6.1.4
TC HRGMv2_1123_1 HRGMv2_1123_1_198 225420 225902 - 4.A.6.1.4
pfam HRGMv2_1123_1 HRGMv2_1123_1_199 225939 226220 - YajC
TC HRGMv2_1123_1 HRGMv2_1123_1_200 226220 226663 - 4.A.6.1.16
Gene ID: HRGMv2_1123_1_193
Type: CAZyme
Location: 219972 - 221141 (-)
Gene ID: HRGMv2_1123_1_194
Type: STP
Location: 221259 - 222425 (-)
Gene ID: HRGMv2_1123_1_195
Type: TF
Location: 222540 - 223271 (-)
Gene ID: HRGMv2_1123_1_196
Type: TC
Location: 223457 - 224539 (-)
Gene ID: HRGMv2_1123_1_197
Type: TC
Location: 224529 - 225329 (-)
Gene ID: HRGMv2_1123_1_198
Type: TC
Location: 225420 - 225902 (-)
Gene ID: HRGMv2_1123_1_199
Type: pfam
Location: 225939 - 226220 (-)
Gene ID: HRGMv2_1123_1_200
Type: TC
Location: 226220 - 226663 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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