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Cluster: HRGMv2_1123_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1123_1 HRGMv2_1123_1_155 176960 177298 - 4.A.3.1.2
TF HRGMv2_1123_1 HRGMv2_1123_1_156 177512 178516 - LacI
TC HRGMv2_1123_1 HRGMv2_1123_1_157 178873 180639 + 4.A.3.1.1
CAZyme HRGMv2_1123_1 HRGMv2_1123_1_158 180706 182145 + GH1
TF HRGMv2_1123_1 HRGMv2_1123_1_159 182413 183450 - LacI
CAZyme HRGMv2_1123_1 HRGMv2_1123_1_160 183792 185234 + GH1
TC HRGMv2_1123_1 HRGMv2_1123_1_161 185411 186523 + 4.A.3.1.1
TC HRGMv2_1123_1 HRGMv2_1123_1_162 186501 187172 + 4.A.3.1.1
TF HRGMv2_1123_1 HRGMv2_1123_1_163 187345 188346 - LacI
TC HRGMv2_1123_1 HRGMv2_1123_1_164 188631 190409 + 4.A.3.1.1
CAZyme HRGMv2_1123_1 HRGMv2_1123_1_165 190485 191906 + GH1
pfam HRGMv2_1123_1 HRGMv2_1123_1_166 192273 193505 + Fic
STP HRGMv2_1123_1 HRGMv2_1123_1_167 193543 193884 - DeoRC
TC HRGMv2_1123_1 HRGMv2_1123_1_168 194047 195741 - 4.A.3.1.1
Gene ID: HRGMv2_1123_1_155
Type: TC
Location: 176960 - 177298 (-)
Gene ID: HRGMv2_1123_1_156
Type: TF
Location: 177512 - 178516 (-)
Gene ID: HRGMv2_1123_1_157
Type: TC
Location: 178873 - 180639 (+)
Gene ID: HRGMv2_1123_1_158
Type: CAZyme
Location: 180706 - 182145 (+)
Gene ID: HRGMv2_1123_1_159
Type: TF
Location: 182413 - 183450 (-)
Gene ID: HRGMv2_1123_1_160
Type: CAZyme
Location: 183792 - 185234 (+)
Gene ID: HRGMv2_1123_1_161
Type: TC
Location: 185411 - 186523 (+)
Gene ID: HRGMv2_1123_1_162
Type: TC
Location: 186501 - 187172 (+)
Gene ID: HRGMv2_1123_1_163
Type: TF
Location: 187345 - 188346 (-)
Gene ID: HRGMv2_1123_1_164
Type: TC
Location: 188631 - 190409 (+)
Gene ID: HRGMv2_1123_1_165
Type: CAZyme
Location: 190485 - 191906 (+)
Gene ID: HRGMv2_1123_1_166
Type: pfam
Location: 192273 - 193505 (+)
Gene ID: HRGMv2_1123_1_167
Type: STP
Location: 193543 - 193884 (-)
Gene ID: HRGMv2_1123_1_168
Type: TC
Location: 194047 - 195741 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1123_1_159 vegetarian > omnivore 1.02334 0.02242
HRGMv2_1123_1_162 vegetarian > omnivore 1.03870 0.02242

🧭 Explore Read Mapping of CGC

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