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Cluster: HRGMv2_1123_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1123_20 HRGMv2_1123_20_20 21289 22215 - CE7
TC HRGMv2_1123_20 HRGMv2_1123_20_21 22347 23174 - 3.A.1.5.27
TC HRGMv2_1123_20 HRGMv2_1123_20_22 23175 25190 - 3.A.1.5.25
TC HRGMv2_1123_20 HRGMv2_1123_20_23 25194 26150 - 3.A.1.5.38
TC HRGMv2_1123_20 HRGMv2_1123_20_24 26308 27921 - 3.A.1.5.27
pfam HRGMv2_1123_20 HRGMv2_1123_20_25 28287 30227 - GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC HRGMv2_1123_20 HRGMv2_1123_20_26 30234 31916 - 2.A.66.4.4
Gene ID: HRGMv2_1123_20_20
Type: CAZyme
Location: 21289 - 22215 (-)
Gene ID: HRGMv2_1123_20_21
Type: TC
Location: 22347 - 23174 (-)
Gene ID: HRGMv2_1123_20_22
Type: TC
Location: 23175 - 25190 (-)
Gene ID: HRGMv2_1123_20_23
Type: TC
Location: 25194 - 26150 (-)
Gene ID: HRGMv2_1123_20_24
Type: TC
Location: 26308 - 27921 (-)
Gene ID: HRGMv2_1123_20_25
Type: pfam
Location: 28287 - 30227 (-)
Gene ID: HRGMv2_1123_20_26
Type: TC
Location: 30234 - 31916 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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