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Cluster: HRGMv2_1123_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1123_16 HRGMv2_1123_16_11 15095 17563 - 4.A.1.1.8
TF HRGMv2_1123_16 HRGMv2_1123_16_12 17773 18492 + GntR
TC HRGMv2_1123_16 HRGMv2_1123_16_13 18799 20115 + 3.A.1.1.45
TC HRGMv2_1123_16 HRGMv2_1123_16_14 20203 21057 + 3.A.1.1.45
TC HRGMv2_1123_16 HRGMv2_1123_16_15 21057 21896 + 3.A.1.1.45
TC HRGMv2_1123_16 HRGMv2_1123_16_16 21965 23164 + 3.A.1.1.22
CAZyme HRGMv2_1123_16 HRGMv2_1123_16_17 23620 25887 - GT35
CAZyme HRGMv2_1123_16 HRGMv2_1123_16_18 26017 27522 - GH77
Gene ID: HRGMv2_1123_16_11
Type: TC
Location: 15095 - 17563 (-)
Gene ID: HRGMv2_1123_16_12
Type: TF
Location: 17773 - 18492 (+)
Gene ID: HRGMv2_1123_16_13
Type: TC
Location: 18799 - 20115 (+)
Gene ID: HRGMv2_1123_16_14
Type: TC
Location: 20203 - 21057 (+)
Gene ID: HRGMv2_1123_16_15
Type: TC
Location: 21057 - 21896 (+)
Gene ID: HRGMv2_1123_16_16
Type: TC
Location: 21965 - 23164 (+)
Gene ID: HRGMv2_1123_16_17
Type: CAZyme
Location: 23620 - 25887 (-)
Gene ID: HRGMv2_1123_16_18
Type: CAZyme
Location: 26017 - 27522 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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