dbCAN Logo

Cluster: HRGMv2_1111_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1111_19 HRGMv2_1111_19_69 85635 86960 + GH4
TC HRGMv2_1111_19 HRGMv2_1111_19_70 87043 88605 + 4.A.1.1.3
TC HRGMv2_1111_19 HRGMv2_1111_19_71 88836 90089 - 2.A.1.2.25
NULL(UNKNOWN) HRGMv2_1111_19 HRGMv2_1111_19_72 90351 91220 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1111_19 HRGMv2_1111_19_73 91334 92227 + Aldose_epim
TC HRGMv2_1111_19 HRGMv2_1111_19_74 92491 93417 + 3.A.1.3.20
TC HRGMv2_1111_19 HRGMv2_1111_19_75 93427 94575 + 3.A.1.3.20
TC HRGMv2_1111_19 HRGMv2_1111_19_76 94598 95383 + 3.A.1.3.20
Gene ID: HRGMv2_1111_19_69
Type: CAZyme
Location: 85635 - 86960 (+)
Gene ID: HRGMv2_1111_19_70
Type: TC
Location: 87043 - 88605 (+)
Gene ID: HRGMv2_1111_19_71
Type: TC
Location: 88836 - 90089 (-)
Gene ID: HRGMv2_1111_19_72
Type:
Location: 90351 - 91220 (+)
Gene ID: HRGMv2_1111_19_73
Type: pfam
Location: 91334 - 92227 (+)
Gene ID: HRGMv2_1111_19_74
Type: TC
Location: 92491 - 93417 (+)
Gene ID: HRGMv2_1111_19_75
Type: TC
Location: 93427 - 94575 (+)
Gene ID: HRGMv2_1111_19_76
Type: TC
Location: 94598 - 95383 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1111_19_76 vegetarian > vegan 1.22617 0.00290

🧭 Explore Read Mapping of CGC

← Back to Cluster List