Cluster: HRGMv2_1111_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1111
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1111_13 | HRGMv2_1111_13_104 | 116425 | 118119 | + | 4.A.3.1.1 |
| STP | HRGMv2_1111_13 | HRGMv2_1111_13_105 | 118283 | 118606 | + | DeoRC |
| pfam | HRGMv2_1111_13 | HRGMv2_1111_13_106 | 118660 | 119892 | - | Fic |
| CAZyme | HRGMv2_1111_13 | HRGMv2_1111_13_107 | 120261 | 121682 | - | GH1 |
| TC | HRGMv2_1111_13 | HRGMv2_1111_13_108 | 121758 | 123536 | - | 4.A.3.1.1 |
| TF | HRGMv2_1111_13 | HRGMv2_1111_13_109 | 123812 | 124822 | + | LacI |
| TC | HRGMv2_1111_13 | HRGMv2_1111_13_110 | 124996 | 126756 | - | 4.A.3.1.1 |
| CAZyme | HRGMv2_1111_13 | HRGMv2_1111_13_111 | 126933 | 128375 | - | GH1 |
| TF | HRGMv2_1111_13 | HRGMv2_1111_13_112 | 128717 | 129754 | + | LacI |
| CAZyme | HRGMv2_1111_13 | HRGMv2_1111_13_113 | 130022 | 131461 | - | GH1 |
| TC | HRGMv2_1111_13 | HRGMv2_1111_13_114 | 131528 | 133303 | - | 4.A.3.1.1 |
| TF | HRGMv2_1111_13 | HRGMv2_1111_13_115 | 133661 | 134665 | + | LacI |
| TC | HRGMv2_1111_13 | HRGMv2_1111_13_116 | 134880 | 135218 | + | 4.A.3.1.2 |
Gene ID: HRGMv2_1111_13_104
Type: TC
Location: 116425 - 118119 (+)
Type: TC
Location: 116425 - 118119 (+)
Gene ID: HRGMv2_1111_13_105
Type: STP
Location: 118283 - 118606 (+)
Type: STP
Location: 118283 - 118606 (+)
Gene ID: HRGMv2_1111_13_106
Type: pfam
Location: 118660 - 119892 (-)
Type: pfam
Location: 118660 - 119892 (-)
Gene ID: HRGMv2_1111_13_107
Type: CAZyme
Location: 120261 - 121682 (-)
Type: CAZyme
Location: 120261 - 121682 (-)
Gene ID: HRGMv2_1111_13_108
Type: TC
Location: 121758 - 123536 (-)
Type: TC
Location: 121758 - 123536 (-)
Gene ID: HRGMv2_1111_13_109
Type: TF
Location: 123812 - 124822 (+)
Type: TF
Location: 123812 - 124822 (+)
Gene ID: HRGMv2_1111_13_110
Type: TC
Location: 124996 - 126756 (-)
Type: TC
Location: 124996 - 126756 (-)
Gene ID: HRGMv2_1111_13_111
Type: CAZyme
Location: 126933 - 128375 (-)
Type: CAZyme
Location: 126933 - 128375 (-)
Gene ID: HRGMv2_1111_13_112
Type: TF
Location: 128717 - 129754 (+)
Type: TF
Location: 128717 - 129754 (+)
Gene ID: HRGMv2_1111_13_113
Type: CAZyme
Location: 130022 - 131461 (-)
Type: CAZyme
Location: 130022 - 131461 (-)
Gene ID: HRGMv2_1111_13_114
Type: TC
Location: 131528 - 133303 (-)
Type: TC
Location: 131528 - 133303 (-)
Gene ID: HRGMv2_1111_13_115
Type: TF
Location: 133661 - 134665 (+)
Type: TF
Location: 133661 - 134665 (+)
Gene ID: HRGMv2_1111_13_116
Type: TC
Location: 134880 - 135218 (+)
Type: TC
Location: 134880 - 135218 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019414505
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1111_13_112 | vegetarian > omnivore | 1.05619 | 0.02242 |