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Cluster: HRGMv2_1111_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1111_13 HRGMv2_1111_13_11 14919 17375 - 4.A.1.1.8
TF HRGMv2_1111_13 HRGMv2_1111_13_12 17603 18322 + GntR
TC HRGMv2_1111_13 HRGMv2_1111_13_13 18629 19945 + 3.A.1.1.45
TC HRGMv2_1111_13 HRGMv2_1111_13_14 20033 20887 + 3.A.1.1.45
TC HRGMv2_1111_13 HRGMv2_1111_13_15 20887 21726 + 3.A.1.1.45
TC HRGMv2_1111_13 HRGMv2_1111_13_16 21794 22993 + 3.A.1.1.22
CAZyme HRGMv2_1111_13 HRGMv2_1111_13_17 23531 25798 - GT35
CAZyme HRGMv2_1111_13 HRGMv2_1111_13_18 25927 27432 - GH77
Gene ID: HRGMv2_1111_13_11
Type: TC
Location: 14919 - 17375 (-)
Gene ID: HRGMv2_1111_13_12
Type: TF
Location: 17603 - 18322 (+)
Gene ID: HRGMv2_1111_13_13
Type: TC
Location: 18629 - 19945 (+)
Gene ID: HRGMv2_1111_13_14
Type: TC
Location: 20033 - 20887 (+)
Gene ID: HRGMv2_1111_13_15
Type: TC
Location: 20887 - 21726 (+)
Gene ID: HRGMv2_1111_13_16
Type: TC
Location: 21794 - 22993 (+)
Gene ID: HRGMv2_1111_13_17
Type: CAZyme
Location: 23531 - 25798 (-)
Gene ID: HRGMv2_1111_13_18
Type: CAZyme
Location: 25927 - 27432 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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