dbCAN Logo

Cluster: HRGMv2_1069_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1069_5 HRGMv2_1069_5_3 2902 5352 - 4.A.1.1.8
NULL(UNKNOWN) HRGMv2_1069_5 HRGMv2_1069_5_4 5374 5493 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_1069_5 HRGMv2_1069_5_5 5577 6296 + GntR
TC HRGMv2_1069_5 HRGMv2_1069_5_6 6603 7919 + 3.A.1.1.45
TC HRGMv2_1069_5 HRGMv2_1069_5_7 8007 8861 + 3.A.1.1.45
TC HRGMv2_1069_5 HRGMv2_1069_5_8 8861 9700 + 3.A.1.1.45
TC HRGMv2_1069_5 HRGMv2_1069_5_9 9769 10968 + 3.A.1.1.22
CAZyme HRGMv2_1069_5 HRGMv2_1069_5_10 11424 13691 - GT35
CAZyme HRGMv2_1069_5 HRGMv2_1069_5_11 13820 15325 - GH77
Gene ID: HRGMv2_1069_5_3
Type: TC
Location: 2902 - 5352 (-)
Gene ID: HRGMv2_1069_5_4
Type:
Location: 5374 - 5493 (+)
Gene ID: HRGMv2_1069_5_5
Type: TF
Location: 5577 - 6296 (+)
Gene ID: HRGMv2_1069_5_6
Type: TC
Location: 6603 - 7919 (+)
Gene ID: HRGMv2_1069_5_7
Type: TC
Location: 8007 - 8861 (+)
Gene ID: HRGMv2_1069_5_8
Type: TC
Location: 8861 - 9700 (+)
Gene ID: HRGMv2_1069_5_9
Type: TC
Location: 9769 - 10968 (+)
Gene ID: HRGMv2_1069_5_10
Type: CAZyme
Location: 11424 - 13691 (-)
Gene ID: HRGMv2_1069_5_11
Type: CAZyme
Location: 13820 - 15325 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List