Cluster: HRGMv2_1069_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1069
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1069_1 | HRGMv2_1069_1_108 | 142894 | 144456 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_1069_1 | HRGMv2_1069_1_109 | 144456 | 145706 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1069_1 | HRGMv2_1069_1_110 | 145709 | 146968 | + | 2.A.66.2.10 |
| pfam | HRGMv2_1069_1 | HRGMv2_1069_1_111 | 146979 | 148073 | + | PS_pyruv_trans |
| CAZyme | HRGMv2_1069_1 | HRGMv2_1069_1_112 | 148082 | 149110 | + | GT2 |
Gene ID: HRGMv2_1069_1_108
Type: CAZyme
Location: 142894 - 144456 (+)
Type: CAZyme
Location: 142894 - 144456 (+)
Gene ID: HRGMv2_1069_1_109
Type:
Location: 144456 - 145706 (+)
Type:
Location: 144456 - 145706 (+)
Gene ID: HRGMv2_1069_1_110
Type: TC
Location: 145709 - 146968 (+)
Type: TC
Location: 145709 - 146968 (+)
Gene ID: HRGMv2_1069_1_111
Type: pfam
Location: 146979 - 148073 (+)
Type: pfam
Location: 146979 - 148073 (+)
Gene ID: HRGMv2_1069_1_112
Type: CAZyme
Location: 148082 - 149110 (+)
Type: CAZyme
Location: 148082 - 149110 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905205405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.