Cluster: HRGMv2_1066_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1066
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1066_3 | HRGMv2_1066_3_80 | 100176 | 103184 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_1066_3 | HRGMv2_1066_3_81 | 103188 | 103643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1066_3 | HRGMv2_1066_3_82 | 103797 | 105260 | + | 2.A.3.7.4 |
| STP | HRGMv2_1066_3 | HRGMv2_1066_3_83 | 105682 | 105930 | + | PTS-HPr |
| STP | HRGMv2_1066_3 | HRGMv2_1066_3_84 | 106167 | 106409 | + | FeoA |
| TC | HRGMv2_1066_3 | HRGMv2_1066_3_85 | 106449 | 106670 | + | 9.A.8.1.6 |
| TC | HRGMv2_1066_3 | HRGMv2_1066_3_86 | 106794 | 109121 | + | 9.A.8.1.6 |
Gene ID: HRGMv2_1066_3_80
Type: CAZyme
Location: 100176 - 103184 (+)
Type: CAZyme
Location: 100176 - 103184 (+)
Gene ID: HRGMv2_1066_3_81
Type:
Location: 103188 - 103643 (+)
Type:
Location: 103188 - 103643 (+)
Gene ID: HRGMv2_1066_3_82
Type: TC
Location: 103797 - 105260 (+)
Type: TC
Location: 103797 - 105260 (+)
Gene ID: HRGMv2_1066_3_83
Type: STP
Location: 105682 - 105930 (+)
Type: STP
Location: 105682 - 105930 (+)
Gene ID: HRGMv2_1066_3_84
Type: STP
Location: 106167 - 106409 (+)
Type: STP
Location: 106167 - 106409 (+)
Gene ID: HRGMv2_1066_3_85
Type: TC
Location: 106449 - 106670 (+)
Type: TC
Location: 106449 - 106670 (+)
Gene ID: HRGMv2_1066_3_86
Type: TC
Location: 106794 - 109121 (+)
Type: TC
Location: 106794 - 109121 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp003471985
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.