Cluster: HRGMv2_1053_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1053
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1053_16 | HRGMv2_1053_16_30 | 30258 | 36671 | - | GH31_18 |
| TF | HRGMv2_1053_16 | HRGMv2_1053_16_31 | 37186 | 37626 | - | MarR |
| NULL(UNKNOWN) | HRGMv2_1053_16 | HRGMv2_1053_16_32 | 37731 | 38057 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1053_16 | HRGMv2_1053_16_33 | 38253 | 39080 | - | 4.A.6.1.6 |
| TC | HRGMv2_1053_16 | HRGMv2_1053_16_34 | 39080 | 39937 | - | 4.A.6.1.1 |
| TC | HRGMv2_1053_16 | HRGMv2_1053_16_35 | 40010 | 40498 | - | 4.A.6.1.9 |
Gene ID: HRGMv2_1053_16_30
Type: CAZyme
Location: 30258 - 36671 (-)
Type: CAZyme
Location: 30258 - 36671 (-)
Gene ID: HRGMv2_1053_16_31
Type: TF
Location: 37186 - 37626 (-)
Type: TF
Location: 37186 - 37626 (-)
Gene ID: HRGMv2_1053_16_32
Type:
Location: 37731 - 38057 (-)
Type:
Location: 37731 - 38057 (-)
Gene ID: HRGMv2_1053_16_33
Type: TC
Location: 38253 - 39080 (-)
Type: TC
Location: 38253 - 39080 (-)
Gene ID: HRGMv2_1053_16_34
Type: TC
Location: 39080 - 39937 (-)
Type: TC
Location: 39080 - 39937 (-)
Gene ID: HRGMv2_1053_16_35
Type: TC
Location: 40010 - 40498 (-)
Type: TC
Location: 40010 - 40498 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp959021055
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1053_16_30 | vegetarian > omnivore | 1.39452 | 0.02033 |
| HRGMv2_1053_16_30 | vegetarian > vegan | 2.31562 | 0.01416 |