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Cluster: HRGMv2_1053_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1053_15 HRGMv2_1053_15_17 17038 17481 + 4.A.6.1.16
pfam HRGMv2_1053_15 HRGMv2_1053_15_18 17481 17762 + YajC
TC HRGMv2_1053_15 HRGMv2_1053_15_19 17799 18281 + 4.A.6.1.4
TC HRGMv2_1053_15 HRGMv2_1053_15_20 18372 19172 + 4.A.6.1.4
TC HRGMv2_1053_15 HRGMv2_1053_15_21 19162 20244 + 4.A.6.1.4
TF HRGMv2_1053_15 HRGMv2_1053_15_22 20430 21161 + GntR
STP HRGMv2_1053_15 HRGMv2_1053_15_23 21276 22442 + SIS | SIS
CAZyme HRGMv2_1053_15 HRGMv2_1053_15_24 22561 23730 + CE9
Gene ID: HRGMv2_1053_15_17
Type: TC
Location: 17038 - 17481 (+)
Gene ID: HRGMv2_1053_15_18
Type: pfam
Location: 17481 - 17762 (+)
Gene ID: HRGMv2_1053_15_19
Type: TC
Location: 17799 - 18281 (+)
Gene ID: HRGMv2_1053_15_20
Type: TC
Location: 18372 - 19172 (+)
Gene ID: HRGMv2_1053_15_21
Type: TC
Location: 19162 - 20244 (+)
Gene ID: HRGMv2_1053_15_22
Type: TF
Location: 20430 - 21161 (+)
Gene ID: HRGMv2_1053_15_23
Type: STP
Location: 21276 - 22442 (+)
Gene ID: HRGMv2_1053_15_24
Type: CAZyme
Location: 22561 - 23730 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1053_15_18 vegan > omnivore 1.02401 0.00701

🧭 Explore Read Mapping of CGC

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