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Cluster: HRGMv2_1048_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1048_16 HRGMv2_1048_16_5 3770 4939 - CE9
STP HRGMv2_1048_16 HRGMv2_1048_16_6 5058 6224 - SIS | SIS
TF HRGMv2_1048_16 HRGMv2_1048_16_7 6339 7070 - GntR
TC HRGMv2_1048_16 HRGMv2_1048_16_8 7255 8337 - 4.A.6.1.4
TC HRGMv2_1048_16 HRGMv2_1048_16_9 8327 9127 - 4.A.6.1.4
TC HRGMv2_1048_16 HRGMv2_1048_16_10 9218 9700 - 4.A.6.1.4
pfam HRGMv2_1048_16 HRGMv2_1048_16_11 9737 10018 - YajC
TC HRGMv2_1048_16 HRGMv2_1048_16_12 10018 10461 - 4.A.6.1.16
Gene ID: HRGMv2_1048_16_5
Type: CAZyme
Location: 3770 - 4939 (-)
Gene ID: HRGMv2_1048_16_6
Type: STP
Location: 5058 - 6224 (-)
Gene ID: HRGMv2_1048_16_7
Type: TF
Location: 6339 - 7070 (-)
Gene ID: HRGMv2_1048_16_8
Type: TC
Location: 7255 - 8337 (-)
Gene ID: HRGMv2_1048_16_9
Type: TC
Location: 8327 - 9127 (-)
Gene ID: HRGMv2_1048_16_10
Type: TC
Location: 9218 - 9700 (-)
Gene ID: HRGMv2_1048_16_11
Type: pfam
Location: 9737 - 10018 (-)
Gene ID: HRGMv2_1048_16_12
Type: TC
Location: 10018 - 10461 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1048_16_11 vegan > omnivore 1.03828 0.00701

🧭 Explore Read Mapping of CGC

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