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Cluster: HRGMv2_1048_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1048_3 HRGMv2_1048_3_15 19253 20629 - GH13_20
TC HRGMv2_1048_3 HRGMv2_1048_3_16 20783 21979 - 2.A.1.2.18
TC HRGMv2_1048_3 HRGMv2_1048_3_17 22101 24461 - 9.A.8.1.6
NULL(UNKNOWN) HRGMv2_1048_3 HRGMv2_1048_3_18 24583 24903 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_1048_3 HRGMv2_1048_3_19 24951 25850 - S09.UPW
TC HRGMv2_1048_3 HRGMv2_1048_3_20 26095 26658 + 4.A.1.2.6
pfam HRGMv2_1048_3 HRGMv2_1048_3_21 26840 28243 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) HRGMv2_1048_3 HRGMv2_1048_3_22 28493 29278 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1048_3 HRGMv2_1048_3_23 29439 30419 + 3.A.1.34.1
TC HRGMv2_1048_3 HRGMv2_1048_3_24 30624 31547 + 3.A.1.34.1
TC HRGMv2_1048_3 HRGMv2_1048_3_25 31540 32334 + 3.A.1.34.1
pfam HRGMv2_1048_3 HRGMv2_1048_3_26 32492 34519 + Metallophos | 5_nucleotid_C
TC HRGMv2_1048_3 HRGMv2_1048_3_27 34648 35415 + 1.A.23.4.2
pfam HRGMv2_1048_3 HRGMv2_1048_3_28 35509 37425 + Bmp
pfam HRGMv2_1048_3 HRGMv2_1048_3_29 37422 38132 + Metallophos | Metallophos_2
TC HRGMv2_1048_3 HRGMv2_1048_3_30 38258 38965 - 1.C.82.1.1
Gene ID: HRGMv2_1048_3_15
Type: CAZyme
Location: 19253 - 20629 (-)
Gene ID: HRGMv2_1048_3_16
Type: TC
Location: 20783 - 21979 (-)
Gene ID: HRGMv2_1048_3_17
Type: TC
Location: 22101 - 24461 (-)
Gene ID: HRGMv2_1048_3_18
Type:
Location: 24583 - 24903 (-)
Gene ID: HRGMv2_1048_3_19
Type: peptidase
Location: 24951 - 25850 (-)
Gene ID: HRGMv2_1048_3_20
Type: TC
Location: 26095 - 26658 (+)
Gene ID: HRGMv2_1048_3_21
Type: pfam
Location: 26840 - 28243 (+)
Gene ID: HRGMv2_1048_3_22
Type:
Location: 28493 - 29278 (+)
Gene ID: HRGMv2_1048_3_23
Type: TC
Location: 29439 - 30419 (+)
Gene ID: HRGMv2_1048_3_24
Type: TC
Location: 30624 - 31547 (+)
Gene ID: HRGMv2_1048_3_25
Type: TC
Location: 31540 - 32334 (+)
Gene ID: HRGMv2_1048_3_26
Type: pfam
Location: 32492 - 34519 (+)
Gene ID: HRGMv2_1048_3_27
Type: TC
Location: 34648 - 35415 (+)
Gene ID: HRGMv2_1048_3_28
Type: pfam
Location: 35509 - 37425 (+)
Gene ID: HRGMv2_1048_3_29
Type: pfam
Location: 37422 - 38132 (+)
Gene ID: HRGMv2_1048_3_30
Type: TC
Location: 38258 - 38965 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1048_3_26 vegan > omnivore 1.84905 0.00701
HRGMv2_1048_3_26 vegetarian > omnivore 1.38033 0.01287

🧭 Explore Read Mapping of CGC

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