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Cluster: HRGMv2_1045_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1045_2 HRGMv2_1045_2_50 55136 55579 + 4.A.6.1.16
pfam HRGMv2_1045_2 HRGMv2_1045_2_51 55579 55860 + YajC
TC HRGMv2_1045_2 HRGMv2_1045_2_52 55897 56379 + 4.A.6.1.4
TC HRGMv2_1045_2 HRGMv2_1045_2_53 56470 57270 + 4.A.6.1.4
TC HRGMv2_1045_2 HRGMv2_1045_2_54 57260 58342 + 4.A.6.1.4
TF HRGMv2_1045_2 HRGMv2_1045_2_55 58527 59258 + GntR
STP HRGMv2_1045_2 HRGMv2_1045_2_56 59373 60539 + SIS | SIS
CAZyme HRGMv2_1045_2 HRGMv2_1045_2_57 60657 61826 + CE9
Gene ID: HRGMv2_1045_2_50
Type: TC
Location: 55136 - 55579 (+)
Gene ID: HRGMv2_1045_2_51
Type: pfam
Location: 55579 - 55860 (+)
Gene ID: HRGMv2_1045_2_52
Type: TC
Location: 55897 - 56379 (+)
Gene ID: HRGMv2_1045_2_53
Type: TC
Location: 56470 - 57270 (+)
Gene ID: HRGMv2_1045_2_54
Type: TC
Location: 57260 - 58342 (+)
Gene ID: HRGMv2_1045_2_55
Type: TF
Location: 58527 - 59258 (+)
Gene ID: HRGMv2_1045_2_56
Type: STP
Location: 59373 - 60539 (+)
Gene ID: HRGMv2_1045_2_57
Type: CAZyme
Location: 60657 - 61826 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1045_2_51 vegan > omnivore 1.15431 0.00455

🧭 Explore Read Mapping of CGC

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